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Report for CCDS77854.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
77854.1 Public Homo sapiens 3 GOLIM4 24 110 108 CCDS HistoryNCBI Gene:27333Re-query CCDS DB by CCDS ID:77854.1Re-query CCDS DB by GeneID:27333See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 77854.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000309027.4 ENSP00000309893.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000309027.4Link to Ensembl Protein Viewer:ENSP00000309893.4Re-query CCDS DB by Nucleotide ID:ENST00000309027Re-query CCDS DB by Protein ID:ENSP00000309893
Original member Current member NCBI NM_001308155.2 NP_001295084.1 Accepted alive Link to Nucleotide Sequence:NM_001308155.2Link to Protein Sequence:NP_001295084.1Re-query CCDS DB by Nucleotide ID:NM_001308155Re-query CCDS DB by Protein ID:NP_001295084Link to BLAST:NP_001295084.1

Chromosomal Locations for CCDS 77854.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 168010269 168010418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 168010743 168010823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 168024526 168024594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 168024928 168025095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 168027728 168027837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 168029223 168029302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 168029780 168030036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 168032520 168032852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 168036836 168036994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 168041392 168041474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 168043379 168043529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 168044828 168044881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 168046950 168046999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 168048291 168048365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 168095099 168095285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2007 nt):
ATGGGAAACGGGATGTGCTCCCGAAAGCAGAAGCGGATTTTCCAGACGCTGCTGCTGCTGACCGTCGTGT
TCGGCTTTCTCTACGGCGCGATGCTCTACTACGAGCTGCAGACGCAGCTGCGGAAAGCCGAGGCGGTGGC
GCTCAAGTACCAGCAGCACCAGGAGTCCCTCTCCGCCCAGTTACAAGTTGTATATGAACACAGATCAAGA
TTAGAGAAATCCTTGCAAAAAGAAAGACTTGAACATAAAAAAGCAAAGGAAGATTTTCTTGTTTATAAGT
TAGAAGCACAAGAAACATTAAATAAAGGAAGGCAAGATTCCAATAGCAGATACAGTGCACTGAATGTCCA
ACATCAGATGTTGAAAAGCCAACACGAGGAGCTAAAGAAACAGCACAGTGACTTGGAAGAGGAACATCGC
AAACAAGGGGAAGACTTCAGTAGAACATTTAATGACCATAAGCAAAAATACTTGCAGCTCCAGCAAGAAA
AAGAACAAGAACTTTCTAAGCTAAAAGAGACTGTATACAATTTGAGAGAAGAGAATAGACAACTAAGGAA
AGCACACCAAGACATACATACACAGCTTCAAGATGTCAAGACTCAAGTTGCAGAATATAAACAACTGAAA
GATACTCTGAATAGGATTCCAAGCCTTCGAAAACCTGATCCAGCAGAACAGCAAAATGTGACCCAGGTGG
CACATTCTCCACAAGGTTACAACACAGCAAGGGAGAAGCCAACCCGAGAGGTGCAGGAGGTGTCTCGAAA
TAATGATGTGTGGCAGAACCATGAAGCAGTTCCTGGAAGAGCAGAAGACACAAAACTCTATGCTCCCACC
CATAAGGAGGCAGAATTTCAGGCTCCCCCAGAGCCAATCCAACAAGAAGTGGAACGCAGAGAACCTGAGG
AGCATCAGGTGGAAGAGGAGCACAGAAAGGCCCTGGAGGAGGAAGAAATGGAGCAGGTCGGGCAAGCAGA
ACATCTTGAGGAGGAACACGATCCATCACCAGAGGAGCAGGATCGGGAGTGGAAAGAGCAGCATGAGCAA
CGAGAAGCAGCCAACCTCCTGGAAGGGCACGCGCGTGCTGAGGTGTACCCTTCAGCCAAGCCAATGATCA
AATTCCAATCACCCTATGAGGAACAGTTGGAACAGCAGAGACTGGCAGTGCAGCAGGTGGAGGAGGCCCA
GCAGCTGCGGGAACACCAGGAAGCTTTGCACCAGCAGAGGCTGCAGGGGCACTTACTACGGCAGCAGGAA
CAGCAGCAGCAGCAGGTGGCAAGAGAGATGGCCCTGCAGAGGCAGGCTGAGCTTGAGGAGGGCCGGCCGC
AGCACCAGGAGCAGCTCCGGCAGCAAGCTCATTATGATGCTATGGATAATGATATCGTTCAGGGAGCAGA
GGACCAGGGAATCCAAGGAGAGGAAGGAGCCTATGAAAGAGACAACCAGCACCAAGATGAAGCAGAAGGA
GATCCAGGTAATAGACATGAGCCTCGTGAACAAGGACCCCGAGAAGCCGACCCAGAATCTGAGGCAGATA
GGGCAGCTGTAGAAGATATAAACCCAGCAGATGACCCTAATAATCAAGGTGAGGATGAATTTGAAGAAGC
CGAGCAAGTGAGAGAAGAAAATTTGCCAGATGAAAATGAAGAGCAAAAACAAAGTAATCAAAAGCAAGAG
AATACAGAAGTGGAGGAACATTTGGTGATGGCAGGAAATCCAGACCAGCAGGAGGACAATGTTGATGAAC
AGTACCAGGAAGAGGCAGAAGAGGAGGTTCAGGAAGATTTGACTGAAGAGAAAAAAAGGGAACTGGAGCA
TAATGCTGAAGAGACCTATGGTGAAAATGATGAAAATACTGATGATAAAAATAATGATGGAGAAGAGCAA
GAAGTTCGAGATGACAACCGCCCCAAAGGCCGAGAGGAACACTACGAGGAGGAAGAAGAGGAGGAAGAAG
ACGGGGCTGCAGTTGCTGAGAAATCACATCGAAGAGCTGAAATGTAG

Translation (668 aa):
MGNGMCSRKQKRIFQTLLLLTVVFGFLYGAMLYYELQTQLRKAEAVALKYQQHQESLSAQLQVVYEHRSR
LEKSLQKERLEHKKAKEDFLVYKLEAQETLNKGRQDSNSRYSALNVQHQMLKSQHEELKKQHSDLEEEHR
KQGEDFSRTFNDHKQKYLQLQQEKEQELSKLKETVYNLREENRQLRKAHQDIHTQLQDVKTQVAEYKQLK
DTLNRIPSLRKPDPAEQQNVTQVAHSPQGYNTAREKPTREVQEVSRNNDVWQNHEAVPGRAEDTKLYAPT
HKEAEFQAPPEPIQQEVERREPEEHQVEEEHRKALEEEEMEQVGQAEHLEEEHDPSPEEQDREWKEQHEQ
REAANLLEGHARAEVYPSAKPMIKFQSPYEEQLEQQRLAVQQVEEAQQLREHQEALHQQRLQGHLLRQQE
QQQQQVAREMALQRQAELEEGRPQHQEQLRQQAHYDAMDNDIVQGAEDQGIQGEEGAYERDNQHQDEAEG
DPGNRHEPREQGPREADPESEADRAAVEDINPADDPNNQGEDEFEEAEQVREENLPDENEEQKQSNQKQE
NTEVEEHLVMAGNPDQQEDNVDEQYQEEAEEEVQEDLTEEKKRELEHNAEETYGENDENTDDKNNDGEEQ
EVRDDNRPKGREEHYEEEEEEEEDGAAVAEKSHRRAEM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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