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Report for CCDS2712.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2712.1 Public Homo sapiens 3 TCAIM 24 110 108 CCDS HistoryNCBI Gene:285343Re-query CCDS DB by CCDS ID:2712.1Re-query CCDS DB by GeneID:285343See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2712.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000342649.9 ENSP00000341539.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000342649.9Link to Ensembl Protein Viewer:ENSP00000341539.4Re-query CCDS DB by Nucleotide ID:ENST00000342649Re-query CCDS DB by Protein ID:ENSP00000341539
Original member Current member EBI ENST00000417237.5 ENSP00000402581.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000417237.5Link to Ensembl Protein Viewer:ENSP00000402581.1Re-query CCDS DB by Nucleotide ID:ENST00000417237Re-query CCDS DB by Protein ID:ENSP00000402581
Original member Current member NCBI NM_001282913.2 NP_001269842.1 Accepted alive Link to Nucleotide Sequence:NM_001282913.2Link to Protein Sequence:NP_001269842.1Re-query CCDS DB by Nucleotide ID:NM_001282913Re-query CCDS DB by Protein ID:NP_001269842Link to BLAST:NP_001269842.1
Original member Current member NCBI NM_173826.4 NP_776187.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173826.4Link to Protein Sequence:NP_776187.2Re-query CCDS DB by Nucleotide ID:NM_173826Re-query CCDS DB by Protein ID:NP_776187Link to BLAST:NP_776187.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269842.1 496 Q8N3R3-1 496 100% 0 0
NP_776187.2 496 Q8N3R3-1 496 100% 0 0

Chromosomal Locations for CCDS 2712.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 44354783 44354811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44357741 44357876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44361365 44361518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44367456 44367708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44392855 44392977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44396400 44396497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44396743 44396834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44400355 44400587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44401203 44401334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44407442 44407682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1491 nt):
ATGTTTTGCCACCTGAGACCTATGAGGAGGTTATGTCTAGAGAAGATATTTCCACACTGGTTTCCCTTTT
CAAGAGCTTTATCGGGAGCTGAAGCAGTCAATGCCTTGAGGCCTTTCTATTTTGCAGTACATCCAGATTT
CTTTGGACAGCACCCCGTAGAAAGGGAAATCAATGAAAATTCTCTTAAAAGGTTAAGTGTCTACCTAGAA
AACCTCCAGAAACCAGGCTTCAAGTCTTTGAAACCAACTCAGCTTACATTTTATGTAAGAGAAACAGACC
AGAGTTCCTCCGATGGCCAGGAACCTTTTAGTACTTCCGGATTTCGAGCAGTCAAATTTACTTTGCACAC
CAGAGATCTGCTAAGCACAGTGTTATATATTCTCAACTCCTGCAGTTTATCTGTTGAACATATCCAAAGC
TTGAATACTAATATGCATACCCAGCCTCTCAAAGAAGCTAAAAGGATGCCTGACAGGCCCATCAAATGGG
ACAAGTCTTATTACTCCTTTACTGGATTCAAGGACCCTGATGAAGACCTTGAACAAGTCTCGAGAGTGGA
AACAACTCTCACATCCTGGTTAGATAACAATGGGAAAAGTGCTGTTAAAAAGCTAAAGAACAGTTTGCCA
CTTAGAAAAGAACTAGATCGTTTAAAAGATGAACTGTCTCATCAATTGCAACTCTCAGATATCAGGTGGC
AGAGGAGCTGGGGCATCGCCCACCGCTGTAGCCAGCTGCATAGTTTAAGCCGCTTAGCACAGCAGAATTT
GGAAACACTTAAAAAAGCAAAAGGGTGTACAATCATATTTACAGACCGTTCTGGCATGAGTGCAGTGGGC
CATGTGATGCTAGGAACAATGGATGTCCATCACCACTGGACAAAACTTTTTGAAAGATTGCCAAGTTATT
TTGACCTTCAGAGGAGGCTGATGATTTTAGAAGACCAAATAAGCTATCTTTTAGGTGGCATACAAGTTGT
TTATATTGAAGAATTACAGCCAGTATTGACACTTGAAGAATATTACTCTCTTCTTGATGTGTTTTATAAT
AGACTGTTGAAAAGTAGAATACTATTTCACCCTCGAAGTTTGCGTGGTTTACAAATGATCCTTAACAGTG
ACAGATATGCTCCAAGCTTGCATGAACTCGGGCATTTTAATATTCCAACACTCTGTGATCCAGCAAATCT
CCAGTGGTTTATTCTCACCAAAGCTCAGCAGGCAAGAGAGAACATGAAAAGAAAGGAAGAGTTAAAGGTT
ATTGAAAATGAATTGATACAGGCATCAACAAAGAAATTTTCTTTGGAGAAGTTATATAAAGAGCCCAGCA
TTTCTAGTATACAAATGGTGGATTGTTGTAAGAGACTTCTAGAACAATCACTGCCTTACCTACATGGGAT
GCACCTCTGCATTTCACATTTTTACTCTGTTATGCAAGATGGAGACCTTTGTATTCCTTGGAATTGGAAG
AATGGAGAAGCCATTAAGTAA

Translation (496 aa):
MFCHLRPMRRLCLEKIFPHWFPFSRALSGAEAVNALRPFYFAVHPDFFGQHPVEREINENSLKRLSVYLE
NLQKPGFKSLKPTQLTFYVRETDQSSSDGQEPFSTSGFRAVKFTLHTRDLLSTVLYILNSCSLSVEHIQS
LNTNMHTQPLKEAKRMPDRPIKWDKSYYSFTGFKDPDEDLEQVSRVETTLTSWLDNNGKSAVKKLKNSLP
LRKELDRLKDELSHQLQLSDIRWQRSWGIAHRCSQLHSLSRLAQQNLETLKKAKGCTIIFTDRSGMSAVG
HVMLGTMDVHHHWTKLFERLPSYFDLQRRLMILEDQISYLLGGIQVVYIEELQPVLTLEEYYSLLDVFYN
RLLKSRILFHPRSLRGLQMILNSDRYAPSLHELGHFNIPTLCDPANLQWFILTKAQQARENMKRKEELKV
IENELIQASTKKFSLEKLYKEPSISSIQMVDCCKRLLEQSLPYLHGMHLCISHFYSVMQDGDLCIPWNWK
NGEAIK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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