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Report for CCDS7037.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7037.2 Public Homo sapiens 9 RNF208 24 110 108 CCDS HistoryNCBI Gene:727800Re-query CCDS DB by CCDS ID:7037.2Re-query CCDS DB by GeneID:727800See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 7037.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000391553.3 ENSP00000375397.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000391553.3Link to Ensembl Protein Viewer:ENSP00000375397.1Re-query CCDS DB by Nucleotide ID:ENST00000391553Re-query CCDS DB by Protein ID:ENSP00000375397
Original member Current member EBI ENST00000392827.2 ENSP00000376572.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392827.2Link to Ensembl Protein Viewer:ENSP00000376572.1Re-query CCDS DB by Nucleotide ID:ENST00000392827Re-query CCDS DB by Protein ID:ENSP00000376572
Original member Current member NCBI NM_001388297.1 NP_001375226.1 Accepted alive Link to Nucleotide Sequence:NM_001388297.1Link to Protein Sequence:NP_001375226.1Re-query CCDS DB by Nucleotide ID:NM_001388297Re-query CCDS DB by Protein ID:NP_001375226Link to BLAST:NP_001375226.1
Original member Current member NCBI NM_001388298.1 NP_001375227.1 Accepted alive Link to Nucleotide Sequence:NM_001388298.1Link to Protein Sequence:NP_001375227.1Re-query CCDS DB by Nucleotide ID:NM_001388298Re-query CCDS DB by Protein ID:NP_001375227Link to BLAST:NP_001375227.1
Original member Current member NCBI NM_031297.7 NP_112587.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_031297.7Link to Protein Sequence:NP_112587.2Re-query CCDS DB by Nucleotide ID:NM_031297Re-query CCDS DB by Protein ID:NP_112587Link to BLAST:NP_112587.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001375226.1 261 Q9H0X6 261 100% 0 0
NP_001375227.1 261 Q9H0X6 261 100% 0 0
NP_112587.2 261 Q9H0X6 261 100% 0 0

Chromosomal Locations for CCDS 7037.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 137220427 137221212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (786 nt):
ATGCCCTCTGACCCCGGGCCCGAGGCGGGCAGTGGCTGGCCGGGCCTCCTCATGTCCTGCCTGAAGGGTC
CCCATGTCATCCTCAAGATGGAGGCCATGAAGATTGTCCACCCTGAAAAGTTCCCTGAGCTACCGGCTGC
CCCCTGCTTCCCGCCTGCTCCCCGGCCCACCCCAACTCTGGCACCCAAGCGTGCCTGGCCCTCAGACACA
GAGATCATTGTCAACCAGGCCTGTGGGGGGGACATGCCTGCCTTGGAAGGGGCACCCCATACCCCGCCAC
TGCCACGGCGGCCCCGTAAGGGAAGCTCGGAGCTGGGCTTTCCCCGCGTGGCCCCAGAGGATGAGGTCAT
TGTGAATCAGTACGTGATTCGGCCTGGCCCCTCGGCCTCGGCGGCTTCTTCGGCGGCGGCAGGCGAGCCC
CTGGAGTGCCCCACCTGTGGGCACTCCTACAATGTCACCCAGCGGAGGCCCCGCGTGCTGTCCTGCCTGC
ACTCTGTGTGTGAGCAGTGCCTGCAGATTCTCTACGAGTCCTGCCCCAAGTACAAGTTCATCTCCTGCCC
CACCTGCCGCCGTGAGACTGTGCTCTTCACCGACTACGGCCTGGCCGCGCTGGCTGTCAACACGTCCATC
CTGAGCCGCCTGCCGCCTGAGGCGCTGACGGCCCCATCCGGGGGTCAGTGGGGGGCTGAGCCCGAGGGCA
GCTGCTACCAGACCTTCCGGCAGTACTGTGGGGCCGCGTGCACCTGCCACGTGCGGAACCCACTGTCCGC
CTGCTCCATCATGTAG

Translation (261 aa):
MPSDPGPEAGSGWPGLLMSCLKGPHVILKMEAMKIVHPEKFPELPAAPCFPPAPRPTPTLAPKRAWPSDT
EIIVNQACGGDMPALEGAPHTPPLPRRPRKGSSELGFPRVAPEDEVIVNQYVIRPGPSASAASSAAAGEP
LECPTCGHSYNVTQRRPRVLSCLHSVCEQCLQILYESCPKYKFISCPTCRRETVLFTDYGLAALAVNTSI
LSRLPPEALTAPSGGQWGAEPEGSCYQTFRQYCGAACTCHVRNPLSACSIM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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