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Report for CCDS11552.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11552.3 Public Homo sapiens 17 SLC35B1 24 110 108 CCDS HistoryNCBI Gene:10237Re-query CCDS DB by CCDS ID:11552.3See the combined annotation on chromosome 17 in Sequence Viewer

Public Note for CCDS 11552.2
The coding region has been updated to scale back the N-terminus to one that is more supported by the available transcript data and by conservation across mammals.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 11552.3

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000240333.12 ENSP00000240333.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000240333.12Link to Ensembl Protein Viewer:ENSP00000240333.8Re-query CCDS DB by Nucleotide ID:ENST00000240333Re-query CCDS DB by Protein ID:ENSP00000240333
Original member Current member NCBI NM_005827.4 NP_005818.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005827.4Link to Protein Sequence:NP_005818.3Re-query CCDS DB by Nucleotide ID:NM_005827Re-query CCDS DB by Protein ID:NP_005818Link to BLAST:NP_005818.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005818.3 322 P78383-1 322 100% 0 0

Chromosomal Locations for CCDS 11552.3

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 49701458 49701510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49702858 49703011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49703188 49703294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49704100 49704226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49705124 49705281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49705866 49705896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49706204 49706334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49706965 49707068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49707730 49707833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (969 nt):
ATGGCCTCTAGCAGCTCCCTGGTGCCCGACCGGCTGCGCCTGCCGCTCTGCTTCCTGGGTGTCTTTGTCT
GCTATTTTTACTATGGGATCCTGCAGGAAAAGATAACAAGAGGAAAGTATGGGGAAGGAGCCAAGCAGGA
GACGTTCACCTTTGCCTTAACTTTGGTCTTCATTCAATGTGTGATCAATGCTGTGTTTGCCAAGATCTTG
ATCCAGTTTTTTGACACTGCCAGGGTGGATCGTACCCGGAGCTGGCTCTATGCTGCCTGTTCTATCTCCT
ATCTGGGTGCCATGGTCTCCAGCAATTCAGCACTACAGTTTGTCAACTACCCAACTCAGGTCCTTGGTAA
ATCCTGCAAGCCAATCCCAGTCATGCTCCTTGGGGTGACCCTCTTGAAGAAGAAGTACCCGTTGGCCAAG
TACCTGTGTGTGCTGTTAATTGTGGCTGGAGTGGCCCTTTTCATGTACAAACCCAAGAAAGTTGTTGGGA
TAGAAGAACACACAGTCGGCTATGGAGAGCTACTCTTGCTATTATCGCTGACCCTGGATGGACTGACTGG
TGTTTCCCAGGACCACATGCGGGCTCATTACCAAACAGGCTCCAACCACATGATGCTGAACATCAACCTT
TGGTCGACATTGCTGCTGGGAATGGGAATCCTGTTCACTGGGGAGCTCTGGGAGTTCTTGAGCTTTGCTG
AAAGGTACCCTGCCATCATCTATAACATCCTGCTCTTTGGGCTGACCAGTGCCCTGGGTCAGAGCTTCAT
CTTTATGACGGTTGTGTATTTTGGTCCCCTGACCTGCTCCATCATCACTACAACTCGAAAGTTCTTCACA
ATTTTGGCCTCTGTGATCCTCTTCGCCAATCCCATCAGCCCCATGCAGTGGGTGGGCACTGTGCTTGTGT
TCCTGGGTCTTGGTCTTGATGCCAAGTTTGGGAAAGGAGCTAAGAAGACATCCCACTAG

Translation (322 aa):
MASSSSLVPDRLRLPLCFLGVFVCYFYYGILQEKITRGKYGEGAKQETFTFALTLVFIQCVINAVFAKIL
IQFFDTARVDRTRSWLYAACSISYLGAMVSSNSALQFVNYPTQVLGKSCKPIPVMLLGVTLLKKKYPLAK
YLCVLLIVAGVALFMYKPKKVVGIEEHTVGYGELLLLLSLTLDGLTGVSQDHMRAHYQTGSNHMMLNINL
WSTLLLGMGILFTGELWEFLSFAERYPAIIYNILLFGLTSALGQSFIFMTVVYFGPLTCSIITTTRKFFT
ILASVILFANPISPMQWVGTVLVFLGLGLDAKFGKGAKKTSH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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