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Report for CCDS56006.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56006.1 Public Homo sapiens 16 ZNF821 24 110 108 CCDS HistoryNCBI Gene:55565Re-query CCDS DB by CCDS ID:56006.1Re-query CCDS DB by GeneID:55565See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56006.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000425432.6 ENSP00000398089.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000425432.6Link to Ensembl Protein Viewer:ENSP00000398089.1Re-query CCDS DB by Nucleotide ID:ENST00000425432Re-query CCDS DB by Protein ID:ENSP00000398089
Original member Current member EBI ENST00000565601.5 ENSP00000455648.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000565601.5Link to Ensembl Protein Viewer:ENSP00000455648.1Re-query CCDS DB by Nucleotide ID:ENST00000565601Re-query CCDS DB by Protein ID:ENSP00000455648
Original member Current member NCBI NM_001201552.2 NP_001188481.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001201552.2Link to Protein Sequence:NP_001188481.1Re-query CCDS DB by Nucleotide ID:NM_001201552Re-query CCDS DB by Protein ID:NP_001188481Link to BLAST:NP_001188481.1
Original member Current member NCBI NM_001201553.1 NP_001188482.1 Accepted alive Link to Nucleotide Sequence:NM_001201553.1Link to Protein Sequence:NP_001188482.1Re-query CCDS DB by Nucleotide ID:NM_001201553Re-query CCDS DB by Protein ID:NP_001188482Link to BLAST:NP_001188482.1
Original member Current member NCBI NM_001376297.1 NP_001363226.1 Accepted alive Link to Nucleotide Sequence:NM_001376297.1Link to Protein Sequence:NP_001363226.1Re-query CCDS DB by Nucleotide ID:NM_001376297Re-query CCDS DB by Protein ID:NP_001363226Link to BLAST:NP_001363226.1
Original member Current member NCBI NM_001376298.1 NP_001363227.1 Accepted alive Link to Nucleotide Sequence:NM_001376298.1Link to Protein Sequence:NP_001363227.1Re-query CCDS DB by Nucleotide ID:NM_001376298Re-query CCDS DB by Protein ID:NP_001363227Link to BLAST:NP_001363227.1
Original member Current member NCBI NM_001376299.1 NP_001363228.1 Accepted alive Link to Nucleotide Sequence:NM_001376299.1Link to Protein Sequence:NP_001363228.1Re-query CCDS DB by Nucleotide ID:NM_001376299Re-query CCDS DB by Protein ID:NP_001363228Link to BLAST:NP_001363228.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001188481.1 412 O75541-1 412 100% 0 0
NP_001188482.1 412 O75541-1 412 100% 0 0
NP_001363226.1 412 O75541-1 412 100% 0 0
NP_001363227.1 412 O75541-1 412 100% 0 0
NP_001363228.1 412 O75541-1 412 100% 0 0

Chromosomal Locations for CCDS 56006.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 71860018 71860672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71861776 71861942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71864138 71864242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71864903 71865048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71867912 71868037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71879907 71879946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1239 nt):
ATGTCCCGTCGGAAACAGACAAATCCAAATAAAGTTCACTGGGATCAAGTATTTGCTGGGCTAGAAGAGC
AAGCCCGCCAGGCGATGATGAAAACTGATTTTCCTGGAGACCTTGGCAGTCAGCGACAAGCTATCCAACA
ACTAAGAGATCAGGACTCCAGTAGCAGTGACAGTGAGGGTGATGAAGAGGAGACGACACAAGATGAAGTC
TCTTCCCACACATCAGAGGAAGATGGAGGGGTGGTCAAAGTGGAGAAAGAGTTAGAAAATACAGAACAGC
CTGTTGGTGGGAACGAAGTGGTAGAGCACGAGGTCACAGGGAATTTGAATTCTGACCCCTTGCTTGAACT
CTGCCAGTGTCCCCTCTGCCAGCTAGACTGCGGGAGCCGGGAGCAGTTGATTGCTCACGTGTACCAGCAC
ACTGCAGCAGTGGTGAGCGCCAAGAGCTACATGTGTCCTGTCTGTGGCCGGGCCCTTAGCTCCCCGGGGT
CATTGGGTCGCCACCTCTTAATCCACTCGGAGGACCAGCGATCTAACTGTGCTGTGTGTGGAGCCCGGTT
CACCAGCCATGCCACTTTTAACAGTGAGAAACTTCCTGAAGTACTAAATATGGAATCCCTACCCACAGTC
CACAATGAGGGTCCCTCCAGTGCTGAGGGGAAGGATATTGCCTTTAGTCCTCCAGTGTACCCTGCTGGAA
TTCTGCTTGTGTGCAACAACTGTGCTGCCTACCGTAAACTGCTGGAAGCCCAGACTCCCAGTGTACGCAA
GTGGGCTCTACGTCGACAGAATGAGCCTTTGGAAGTACGGCTGCAGCGGCTGGAACGAGAGCGCACGGCC
AAGAAGAGCCGGCGGGACAATGAGACCCCCGAGGAGCGGGAGGTGAGGCGCATGAGGGACCGTGAAGCCA
AGCGCTTGCAGCGCATGCAGGAGACAGACGAGCAGCGGGCACGCCGGCTGCAGCGGGATCGGGAGGCCAT
GAGGCTGAAGCGGGCCAATGAAACCCCGGAAAAGCGGCAGGCCCGGCTCATCCGAGAGCGAGAGGCCAAG
CGGCTCAAGAGGAGGCTGGAGAAAATGGACATGATGTTGCGAGCTCAGTTTGGCCAGGACCCTTCTGCCA
TGGCAGCCTTAGCAGCTGAAATGAACTTCTTCCAGCTGCCTGTAAGTGGGGTGGAGTTGGACAGCCAGCT
TCTGGGCAAGATGGCCTTTGAAGAGCAGAACAGCAGCTCTCTGCACTGA

Translation (412 aa):
MSRRKQTNPNKVHWDQVFAGLEEQARQAMMKTDFPGDLGSQRQAIQQLRDQDSSSSDSEGDEEETTQDEV
SSHTSEEDGGVVKVEKELENTEQPVGGNEVVEHEVTGNLNSDPLLELCQCPLCQLDCGSREQLIAHVYQH
TAAVVSAKSYMCPVCGRALSSPGSLGRHLLIHSEDQRSNCAVCGARFTSHATFNSEKLPEVLNMESLPTV
HNEGPSSAEGKDIAFSPPVYPAGILLVCNNCAAYRKLLEAQTPSVRKWALRRQNEPLEVRLQRLERERTA
KKSRRDNETPEEREVRRMRDREAKRLQRMQETDEQRARRLQRDREAMRLKRANETPEKRQARLIREREAK
RLKRRLEKMDMMLRAQFGQDPSAMAALAAEMNFFQLPVSGVELDSQLLGKMAFEEQNSSSLH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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