NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS10667.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10667.2 Public Homo sapiens 16 TLCD3B 24 110 108 CCDS HistoryNCBI Gene:83723Re-query CCDS DB by CCDS ID:10667.2Re-query CCDS DB by GeneID:83723See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 10667.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380495.9 ENSP00000369863.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000380495.9Link to Ensembl Protein Viewer:ENSP00000369863.4Re-query CCDS DB by Nucleotide ID:ENST00000380495Re-query CCDS DB by Protein ID:ENSP00000369863
Original member Current member NCBI NM_031478.6 NP_113666.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_031478.6Link to Protein Sequence:NP_113666.2Re-query CCDS DB by Nucleotide ID:NM_031478Re-query CCDS DB by Protein ID:NP_113666Link to BLAST:NP_113666.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_113666.2 274 Q71RH2-1 274 100% 0 0

Chromosomal Locations for CCDS 10667.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 30025183 30025467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30025726 30025821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30026609 30026843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30029432 30029515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30030403 30030527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (825 nt):
ATGCTGACCCCGATGGTGGCCGGGGGGGTGGTGTTCCCCGGACTCTTCCTCCTCTCCAAGAACACGCTCC
AGCGGCTGCCCCAGCTACGCTGGGAGGAGGCCGACGCAGTCATTGTCTCAGCCAGGCTGGTGTCCTCTGT
CCAGGCCATCATGGCCTCCACTGCCGGCTACATCGTCTCCACCTCCTGCAAGCACATCATTGATGACCAA
CACTGGCTGTCCTCTGCCTACACGCAATTTGCTGTGCCCTACTTCATCTACGACATCTACGCCATGTTCC
TCTGTCACTGGCACAAGCACCAGGTCAAAGGGCATGGAGGGGACGACGGAGCGGCCAGAGCCCCGGGCAG
CACGTGGGCCATAGCGCGTGGCTACCTGCACAAGGAGTTCCTCATGGTGCTCCACCATGCCGCCATGGTG
CTGGTGTGCTTCCCACTCTCAGTGGTGTGGCGACAGGGTAAGGGAGACTTCTTTCTGGGTTGCATGTTGA
TGGCAGAGGTCAGCACGCCCTTCGTCTGCCTTGGCAAGATCCTCATCCAGTACAAGCAGCAGCACACACT
GCTGCACAAGGTGAACGGGGCCCTGATGCTGCTCAGCTTCCTCTGCTGCCGGGTGCTGCTCTTTCCCTAC
CTGTACTGGGCCTACGGGCGCCATGCCGGCCTGCCCCTGCTGGCCGTGCCCCTGGCCATCCCTGCCCACG
TCAACCTGGGCGCTGCGCTGCTCCTGGCCCCTCAGCTCTACTGGTTCTTCCTCATCTGCCGTGGGGCCTG
CCGCCTCTTCTGGCCCCGCTCCCGGCCGCCCCCGGCCTGCCAGGCCCAGGACTGA

Translation (274 aa):
MLTPMVAGGVVFPGLFLLSKNTLQRLPQLRWEEADAVIVSARLVSSVQAIMASTAGYIVSTSCKHIIDDQ
HWLSSAYTQFAVPYFIYDIYAMFLCHWHKHQVKGHGGDDGAARAPGSTWAIARGYLHKEFLMVLHHAAMV
LVCFPLSVVWRQGKGDFFLGCMLMAEVSTPFVCLGKILIQYKQQHTLLHKVNGALMLLSFLCCRVLLFPY
LYWAYGRHAGLPLLAVPLAIPAHVNLGAALLLAPQLYWFFLICRGACRLFWPRSRPPPACQAQD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH