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Report for CCDS12233.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12233.1 Public Homo sapiens 19 ICAM5 24 110 108 CCDS HistoryNCBI Gene:7087Re-query CCDS DB by CCDS ID:12233.1Re-query CCDS DB by GeneID:7087See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12233.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000221980.5 ENSP00000221980.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000221980.5Link to Ensembl Protein Viewer:ENSP00000221980.3Re-query CCDS DB by Nucleotide ID:ENST00000221980Re-query CCDS DB by Protein ID:ENSP00000221980
Original member Current member NCBI NM_003259.4 NP_003250.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003259.4Link to Protein Sequence:NP_003250.3Re-query CCDS DB by Nucleotide ID:NM_003259Re-query CCDS DB by Protein ID:NP_003250Link to BLAST:NP_003250.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003250.3 924 Q9UMF0 924 100% 0 0

Chromosomal Locations for CCDS 12233.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 10290044 10290125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10291072 10291341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10291489 10291809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10292035 10292322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10292612 10292866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10292998 10293246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10293698 10293943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10294040 10294318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10294401 10294640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10295346 10295612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10296339 10296616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2775 nt):
ATGCCAGGGCCTTCGCCAGGGCTGCGCCGGGCGCTACTCGGCCTCTGGGCTGCTCTGGGCCTGGGGCTCT
TCGGCCTCTCAGCGGTCTCGCAGGAGCCCTTCTGGGCGGACCTGCAGCCTCGCGTGGCGTTCGTGGAGCG
CGGGGGCTCGCTGTGGCTGAATTGCAGCACCAACTGCCCTCGGCCGGAGCGCGGTGGCCTGGAGACCTCG
CTGCGCCGAAACGGGACCCAGAGGGGTTTGCGTTGGTTGGCGCGGCAGCTGGTGGACATTCGCGAGCCGG
AGACTCAGCCCGTCTGCTTCTTCCGCTGCGCGCGGCGCACACTACAGGCGCGTGGGCTCATTCGCACTTT
CCAGCGACCAGATCGCGTAGAGCTGATGCCGCTGCCTCCCTGGCAGCCGGTGGGCGAGAACTTCACCCTG
AGCTGTAGGGTCCCCGGCGCCGGGCCCCGTGCGAGCCTCACGCTGACCCTGCTGCGGGGCGCCCAGGAGC
TGATCCGCCGCAGCTTCGCCGGTGAACCACCCCGAGCGCGGGGCGCGGTGCTCACAGCCACGGTACTGGC
TCGGAGGGAGGACCATGGAGCCAATTTCTCGTGTCGCGCCGAGCTGGACCTGCGGCCGCACGGACTGGGA
CTGTTTGAAAACAGCTCGGCCCCCAGAGAGCTCCGAACCTTCTCCCTGTCTCCGGATGCCCCGCGCCTCG
CTGCTCCCCGGCTCTTGGAAGTTGGCTCGGAAAGGCCCGTGAGCTGCACTCTGGACGGACTGTTTCCAGC
CTCAGAGGCCAGGGTCTACCTCGCACTGGGGGACCAGAATCTGAGTCCTGATGTCACCCTCGAAGGGGAC
GCATTCGTGGCCACTGCCACAGCCACAGCTAGCGCAGAGCAGGAGGGTGCCAGGCAGCTGGTCTGCAACG
TCACCCTGGGGGGCGAAAACCGGGAGACCCGGGAGAACGTGACCATCTACAGCTTCCCGGCACCACTCCT
GACCCTGAGCGAACCCAGCGTCTCCGAGGGGCAGATGGTGACAGTAACCTGCGCAGCTGGGGCCCAAGCT
CTGGTCACACTGGAGGGAGTTCCAGCCGCGGTCCCGGGGCAGCCCGCCCAGCTTCAGCTAAATGCCACCG
AGAACGACGACAGACGCAGCTTCTTCTGCGACGCCACCCTCGATGTGGACGGGGAGACCCTGATCAAGAA
CAGGAGCGCAGAGCTTCGTGTCCTATACGCTCCCCGGCTAGACGATTCGGACTGCCCCAGGAGTTGGACG
TGGCCCGAGGGCCCAGAGCAGACGCTGCGCTGCGAGGCCCGCGGGAACCCAGAACCCTCAGTGCACTGTG
CGCGCTCCGACGGCGGGGCCGTGCTGGCTCTGGGCCTGCTGGGTCCAGTCACTCGGGCGCTCTCAGGCAC
TTACCGCTGCAAGGCGGCCAATGATCAAGGCGAGGCGGTCAAGGACGTAACGCTAACGGTGGAGTACGCA
CCAGCGCTGGACAGCGTGGGCTGCCCAGAACGCATTACTTGGCTGGAGGGAACAGAAGCCTCGCTGAGCT
GTGTGGCGCACGGGGTACCGCCGCCTGATGTGATCTGCGTGCGCTCTGGAGAACTCGGGGCCGTCATCGA
GGGGCTGTTGCGTGTGGCCCGGGAGCATGCGGGCACTTACCGCTGCGAAGCCACCAACCCTCGGGGCTCT
GCGGCCAAAAATGTGGCCGTCACGGTGGAATATGGCCCCAGGTTTGAGGAGCCGAGCTGCCCCAGCAATT
GGACATGGGTGGAAGGATCTGGGCGCCTGTTTTCCTGTGAGGTCGATGGGAAGCCACAGCCAAGCGTGAA
GTGCGTGGGCTCCGGGGGCGCCACTGAGGGGGTGCTGCTGCCGCTGGCACCCCCAGACCCTAGTCCCAGA
GCTCCCAGAATCCCTAGAGTCCTGGCACCCGGTATCTACGTCTGCAACGCCACCAACCGCCACGGCTCCG
TGGCCAAAACAGTCGTCGTGAGCGCGGAGTCGCCACCGGAGATGGATGAATCTACCTGCCCAAGTCACCA
GACGTGGCTGGAAGGGGCTGAGGCTTCCGCGCTGGCCTGCGCCGCCCGGGGTCGCCCTTCCCCAGGAGTG
CGCTGCTCTCGGGAAGGCATCCCATGGCCTGAGCAGCAGCGCGTGTCCCGAGAGGACGCGGGCACTTACC
ACTGTGTGGCCACCAATGCGCATGGCACGGACTCCCGGACCGTCACTGTGGGCGTGGAATACCGGCCAGT
GGTGGCCGAACTTGCTGCCTCGCCCCCTGGAGGCGTGCGCCCAGGAGGAAACTTCACGTTGACCTGCCGC
GCGGAGGCCTGGCCTCCAGCCCAGATCAGCTGGCGCGCGCCCCCGGGGGCCCTCAACATCGGCCTGTCGA
GCAACAACAGCACACTGAGCGTGGCAGGCGCCATGGGAAGCCACGGCGGCGAGTACGAGTGCGCAGCCAC
CAACGCGCACGGGCGCCACGCGCGGCGCATCACGGTGCGCGTGGCCGGTCCGTGGCTATGGGTCGCCGTG
GGCGGCGCGGCGGGGGGCGCGGCGCTGCTGGCCGCGGGGGCCGGCCTGGCCTTCTACGTGCAGTCCACCG
CCTGCAAGAAGGGCGAGTACAACGTGCAGGAGGCCGAGAGCTCAGGCGAGGCCGTGTGTCTGAACGGAGC
GGGCGGCGGCGCTGGCGGGGCGGCAGGCGCGGAGGGCGGACCCGAGGCGGCGGGGGGCGCGGCCGAGTCG
CCGGCGGAGGGCGAGGTCTTCGCCATACAGCTGACATCGGCGTGA

Translation (924 aa):
MPGPSPGLRRALLGLWAALGLGLFGLSAVSQEPFWADLQPRVAFVERGGSLWLNCSTNCPRPERGGLETS
LRRNGTQRGLRWLARQLVDIREPETQPVCFFRCARRTLQARGLIRTFQRPDRVELMPLPPWQPVGENFTL
SCRVPGAGPRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAELDLRPHGLG
LFENSSAPRELRTFSLSPDAPRLAAPRLLEVGSERPVSCTLDGLFPASEARVYLALGDQNLSPDVTLEGD
AFVATATATASAEQEGARQLVCNVTLGGENRETRENVTIYSFPAPLLTLSEPSVSEGQMVTVTCAAGAQA
LVTLEGVPAAVPGQPAQLQLNATENDDRRSFFCDATLDVDGETLIKNRSAELRVLYAPRLDDSDCPRSWT
WPEGPEQTLRCEARGNPEPSVHCARSDGGAVLALGLLGPVTRALSGTYRCKAANDQGEAVKDVTLTVEYA
PALDSVGCPERITWLEGTEASLSCVAHGVPPPDVICVRSGELGAVIEGLLRVAREHAGTYRCEATNPRGS
AAKNVAVTVEYGPRFEEPSCPSNWTWVEGSGRLFSCEVDGKPQPSVKCVGSGGATEGVLLPLAPPDPSPR
APRIPRVLAPGIYVCNATNRHGSVAKTVVVSAESPPEMDESTCPSHQTWLEGAEASALACAARGRPSPGV
RCSREGIPWPEQQRVSREDAGTYHCVATNAHGTDSRTVTVGVEYRPVVAELAASPPGGVRPGGNFTLTCR
AEAWPPAQISWRAPPGALNIGLSSNNSTLSVAGAMGSHGGEYECAATNAHGRHARRITVRVAGPWLWVAV
GGAAGGAALLAAGAGLAFYVQSTACKKGEYNVQEAESSGEAVCLNGAGGGAGGAAGAEGGPEAAGGAAES
PAEGEVFAIQLTSA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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