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Report for CCDS12354.4 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12354.4 Public Homo sapiens 19 ANKLE1 24 110 108 CCDS HistoryNCBI Gene:126549Re-query CCDS DB by CCDS ID:12354.4Re-query CCDS DB by GeneID:126549See the combined annotation on chromosome 19 in Sequence Viewer

Public Note for CCDS 12354.2
The coding region has been scaled back at the 5' end to begin from a start codon that is better supported by conservation data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 12354.4

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000404085.7 ENSP00000384008.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000404085.7Link to Ensembl Protein Viewer:ENSP00000384008.3Re-query CCDS DB by Nucleotide ID:ENST00000404085Re-query CCDS DB by Protein ID:ENSP00000384008
Original member Current member NCBI NM_152363.6 NP_689576.6 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152363.6Link to Protein Sequence:NP_689576.6Re-query CCDS DB by Nucleotide ID:NM_152363Re-query CCDS DB by Protein ID:NP_689576Link to BLAST:NP_689576.6

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689576.6 615 Q8NAG6-2 615 100% 0 0

Chromosomal Locations for CCDS 12354.4

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 17281921 17281982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17282057 17282209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17282656 17282761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17282864 17283002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17283225 17283962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17284089 17284266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17285431 17285590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17285681 17285819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17286380 17286552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1848 nt):
ATGTGCTCGGAGGCCCGCCTGGCTCGCAGGTTGCGGGATGCGCTGCGGGAGGAGGAGCCGTGGGCAGTAG
AGGAGCTGCTGCGCTGCGGCGCGGACCCTAATTTGGTGCTAGAGGACGGCGCAGCGGCTGTGCACTTGGC
GGCCGGAGCCCGGCACCCGCGCGGCCTGCGTTGCCTCGGGGCCCTACTGCGCCAAGGCGGGGACCCCAAC
GCTCGATCTGTCGAGGCACTGACGCCGCTGCATGTGGCCGCCGCGTGGGGCTGCCGCCGCGGCCTGGAGC
TGCTGCTGAGCCAAGGAGCGGACCCGGCGCTGCGCGACCAGGACGGACTCCGGCCGCTGGACCTGGCCCT
GCAGCAGGGACACCTGGAGTGCGCGCGAGTCCTGCAGGATCTCGACACGCGGACCAGGACCCGGACCCGG
ATCGGGGCAGAGACTCAGGAGCCCGAGCCTGCACCTGGCACCCCAGGCCTCTCTGGACCTACCGATGAGA
CGCTGGACTCCATAGCACTCCAAAAGCAGCCATGCAGAGGTGACAACAGGGACATTGGCTTGGAGGCTGA
CCCAGGACCCCCCAGCCTCCCTGTTCCCCTTGAAACTGTGGACAAACATGGGAGCTCGGCGTCCCCTCCA
GGGCACTGGGATTACAGCTCAGACGCCTCTTTCGTCACAGCGGTTGAGGTCTCTGGAGCTGAGGACCCAG
CCTCGGACACTCCCCCCTGGGCTGGGTCATTGCCACCGACCAGGCAGGGACTTCTGCATGTTGTCCATGC
CAACCAGAGGGTACCTAGGTCTCAGGGCACGGAGGCAGAACTGAATGCCCGTCTGCAGGCCCTGACTCTG
ACCCCACCAAATGCTGCTGGCTTCCAGTCCTCCCCTTCCTCCATGCCTCTCCTGGACAGGAGTCCAGCTC
ATAGCCCCCCACGGACACCAACCCCTGGAGCTTCTGACTGCCACTGCCTGTGGGAGCACCAGACATCCAT
TGATAGTGACATGGCCACGCTCTGGCTGACAGAGGATGAGGCAAGCTCTACAGGTGGCAGGGAACCTGTC
GGCCCTTGCCGGCACCTGCCAGTCTCCACTGTGTCTGACTTGGAGTTGCTGAAGGGACTCCGAGCACTTG
GTGAGAATCCTCACCCCATCACACCCTTCACCAGGCAGTTGTACCACCAGCAGCTGGAAGAAGCCCAGAT
TGCTCCTGGCCCAGAGTTTTCAGGGCACAGCCTAGAACTGGCTGCAGCCCTGCGGACGGGCTGTATTCCA
GATGTCCAGGCAGATGAAGACGCGCTGGCCCAGCAGTTTGAGCAGCCAGATCCTGCCAGGAGGTGGCGGG
AGGGGGTCGTGAAGTCTAGCTTCACCTATCTGCTGCTGGACCCCAGGGAGACTCAGGACCTGCCAGCCCG
AGCCTTCTCACTGACCCCAGCTGAGCGCCTTCAGACTTTCATCCGTGCCATCTTCTACGTGGGCAAAGGG
ACGAGGGCCCGGCCATATGTCCACCTCTGGGAGGCCCTTGGTCACCATGGGCGGTCAAGAAAACAGCCCC
ACCAGGCCTGCCCCAAGGTGCGTCAGATCTTGGACATCTGGGCCAGTGGTTGCGGTGTTGTGTCCCTACA
TTGCTTCCAGCACGTGGTCGCTGTGGAGGCTTATACACGGGAGGCGTGTATTGTGGAAGCCCTAGGGATC
CAGACGCTCACCAACCAGAAGCAAGGGCACTGCTATGGAGTGGTGGCAGGCTGGCCACCTGCTCGTCGCC
GGCGCTTGGGGGTGCACCTGCTGCACCGTGCCCTCCTTGTCTTCCTGGCTGAAGGCGAGCGACAGCTTCA
TCCCCAGGACATCCAGGCCCGGGGCTGA

Translation (615 aa):
MCSEARLARRLRDALREEEPWAVEELLRCGADPNLVLEDGAAAVHLAAGARHPRGLRCLGALLRQGGDPN
ARSVEALTPLHVAAAWGCRRGLELLLSQGADPALRDQDGLRPLDLALQQGHLECARVLQDLDTRTRTRTR
IGAETQEPEPAPGTPGLSGPTDETLDSIALQKQPCRGDNRDIGLEADPGPPSLPVPLETVDKHGSSASPP
GHWDYSSDASFVTAVEVSGAEDPASDTPPWAGSLPPTRQGLLHVVHANQRVPRSQGTEAELNARLQALTL
TPPNAAGFQSSPSSMPLLDRSPAHSPPRTPTPGASDCHCLWEHQTSIDSDMATLWLTEDEASSTGGREPV
GPCRHLPVSTVSDLELLKGLRALGENPHPITPFTRQLYHQQLEEAQIAPGPEFSGHSLELAAALRTGCIP
DVQADEDALAQQFEQPDPARRWREGVVKSSFTYLLLDPRETQDLPARAFSLTPAERLQTFIRAIFYVGKG
TRARPYVHLWEALGHHGRSRKQPHQACPKVRQILDIWASGCGVVSLHCFQHVVAVEAYTREACIVEALGI
QTLTNQKQGHCYGVVAGWPPARRRRLGVHLLHRALLVFLAEGERQLHPQDIQARG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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