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Report for CCDS1279.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1279.1 Public Homo sapiens 1 CCDC181 24 110 108 CCDS HistoryNCBI Gene:57821Re-query CCDS DB by CCDS ID:1279.1Re-query CCDS DB by GeneID:57821See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1279.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367805.7 ENSP00000356779.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000367805.7Link to Ensembl Protein Viewer:ENSP00000356779.3Re-query CCDS DB by Nucleotide ID:ENST00000367805Re-query CCDS DB by Protein ID:ENSP00000356779
Original member Current member EBI ENST00000545005.5 ENSP00000442297.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000545005.5Link to Ensembl Protein Viewer:ENSP00000442297.1Re-query CCDS DB by Nucleotide ID:ENST00000545005Re-query CCDS DB by Protein ID:ENSP00000442297
Original member Current member NCBI NM_001300968.1 NP_001287897.1 Accepted alive Link to Nucleotide Sequence:NM_001300968.1Link to Protein Sequence:NP_001287897.1Re-query CCDS DB by Nucleotide ID:NM_001300968Re-query CCDS DB by Protein ID:NP_001287897Link to BLAST:NP_001287897.1
Original member Current member NCBI NM_001394008.1 NP_001380937.1 Accepted alive Link to Nucleotide Sequence:NM_001394008.1Link to Protein Sequence:NP_001380937.1Re-query CCDS DB by Nucleotide ID:NM_001394008Re-query CCDS DB by Protein ID:NP_001380937Link to BLAST:NP_001380937.1
Original member Current member NCBI NM_021179.3 NP_067002.1 Accepted alive Link to Nucleotide Sequence:NM_021179.3Link to Protein Sequence:NP_067002.1Re-query CCDS DB by Nucleotide ID:NM_021179Re-query CCDS DB by Protein ID:NP_067002Link to BLAST:NP_067002.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001287897.1 508 Q5TID7-3 508 100% 0 0
NP_001380937.1 508 Q5TID7-3 508 100% 0 0
NP_067002.1 508 Q5TID7-3 508 100% 0 0

Chromosomal Locations for CCDS 1279.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 169395047 169395206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169397237 169397388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169419013 169419159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169421363 169422313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169424811 169424927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1527 nt):
ATGAATGAAAATAAAGATACTGATTCAAAGAAAAGTGAAGAATACGAAGATGACTTTGAAAAGGACCTGG
AGTGGTTAATTAATGAAAATGAAAAAAGTGATGCCAGCATAATAGAGATGGCTTGTGAGAAGGAAGAGAA
TATTAACCAAGACTTAAAAGAGAATGAGACAGTAATGGAGCACACCAAACGGCATTCTGATCCTGACAAA
TCTTTGCAGGATGAGGTCTCACCAAGAAGAAATGACATCATTTCTGTACCAGGTATTCAACCTTTGGATC
CCATATCAGATTCAGATAGTGAAAACTCTTTCCAGGAATCCAAACTAGAAAGCCAGAAAGACTTGGAGGA
GGAAGAGGATGAGGAAGTAAGGAGATATATTATGGAGAAAATTGTACAAGCTAACAAGCTTCTACAGAAT
CAAGAACCGGTGAATGATAAAAGGGAGCGAAAACTTAAGTTCAAGGACCAGTTAGTTGATTTGGAAGTTC
CTCCACTAGAAGACACTACTACTTTTAAAAATTATTTTGAAAACGAAAGGAATATGTTTGGGAAACTGTC
ACAATTATGTATTTCCAATGATTTTGGACAAGAAGATGTGCTCCTGTCACTTACTAATGGAAGCTGTGAA
GAAAACAAGGATAGGACAATACTGGTAGAGAGAGATGGAAAATTTGAACTTCTGAATTTACAAGACATTG
CCAGTCAGGGGTTTTTGCCTCCCATTAATAATGCAAATAGTACAGAAAATGACCCTCAGCAGTTGTTACC
CAGATCTTCCAACTCCTCTGTCAGTGGCACCAAGAAAGAAGATTCTACAGCAAAGATTCATGCTGTCACT
CACTCATCAACAGGAGAGCCGCTGGCTTATATCGCTCAGCCACCACTCAACCGCAAGACTTGTCCAAGCT
CTGCTGTCAACTCAGATCGAAGTAAAGGGAATGGGAAATCTAATCACAGGACACAGTCTGCACATATCTC
ACCAGTGACTTCAACATACTGTCTTTCCCCTCGACAGAAAGAACTACAAAAACAACTAGAAGAAAAGAGA
GAAAAACTGAAAAGAGAGGAAGAGCGACGAAAAATAGAAGAAGAGAAAGAAAAAAAGAGAGAGAATGACA
TAGTATTTAAAGCGTGGTTGCAAAAGAAAAGAGAGCAGGTCTTAGAAATGAGGAGAATTCAGCGAGCAAA
GGAAATTGAAGACATGAACAGTAGAGAAAACAGAGATCCACAACAAGCTTTTCGATTATGGCTTAAAAAA
AAGCACGAAGAGCAGATGAAAGAAAGACAGACAGAAGAACTAAGAAAGCAAGAGGAATGTTTATTCTTCC
TTAAAGGAACAGAAGGCCGGGAAAGGGCCTTTAAACAATGGTTAAGAAGGAAACGGATGGAAAAAATGGC
AGAGCAACAAGCTGTCAGAGAGAGAACTAGACAGCTCCGACTAGAAGCTAAGCGTTCTAAACAGTTACAG
CACCACCTATATATGTCAGAAGCCAAACCTTTTCGTTTTACTGATCATTATAACTGA

Translation (508 aa):
MNENKDTDSKKSEEYEDDFEKDLEWLINENEKSDASIIEMACEKEENINQDLKENETVMEHTKRHSDPDK
SLQDEVSPRRNDIISVPGIQPLDPISDSDSENSFQESKLESQKDLEEEEDEEVRRYIMEKIVQANKLLQN
QEPVNDKRERKLKFKDQLVDLEVPPLEDTTTFKNYFENERNMFGKLSQLCISNDFGQEDVLLSLTNGSCE
ENKDRTILVERDGKFELLNLQDIASQGFLPPINNANSTENDPQQLLPRSSNSSVSGTKKEDSTAKIHAVT
HSSTGEPLAYIAQPPLNRKTCPSSAVNSDRSKGNGKSNHRTQSAHISPVTSTYCLSPRQKELQKQLEEKR
EKLKREEERRKIEEEKEKKRENDIVFKAWLQKKREQVLEMRRIQRAKEIEDMNSRENRDPQQAFRLWLKK
KHEEQMKERQTEELRKQEECLFFLKGTEGRERAFKQWLRRKRMEKMAEQQAVRERTRQLRLEAKRSKQLQ
HHLYMSEAKPFRFTDHYN


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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