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Report for CCDS2067.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2067.1 Public Homo sapiens 2 TGFBRAP1 24 110 108 CCDS HistoryNCBI Gene:9392Re-query CCDS DB by CCDS ID:2067.1Re-query CCDS DB by GeneID:9392See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2067.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000258449.2 ENSP00000258449.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000258449.2Link to Ensembl Protein Viewer:ENSP00000258449.1Re-query CCDS DB by Nucleotide ID:ENST00000258449Re-query CCDS DB by Protein ID:ENSP00000258449
Original member Current member EBI ENST00000393359.7 ENSP00000377027.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000393359.7Link to Ensembl Protein Viewer:ENSP00000377027.2Re-query CCDS DB by Nucleotide ID:ENST00000393359Re-query CCDS DB by Protein ID:ENSP00000377027
Original member Current member EBI ENST00000595531.5 ENSP00000471434.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000595531.5Link to Ensembl Protein Viewer:ENSP00000471434.2Re-query CCDS DB by Nucleotide ID:ENST00000595531Re-query CCDS DB by Protein ID:ENSP00000471434
Original member Current member NCBI NM_001142621.3 NP_001136093.1 Accepted alive Link to Nucleotide Sequence:NM_001142621.3Link to Protein Sequence:NP_001136093.1Re-query CCDS DB by Nucleotide ID:NM_001142621Re-query CCDS DB by Protein ID:NP_001136093Link to BLAST:NP_001136093.1
Original member Current member NCBI NM_004257.6 NP_004248.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004257.6Link to Protein Sequence:NP_004248.2Re-query CCDS DB by Nucleotide ID:NM_004257Re-query CCDS DB by Protein ID:NP_004248Link to BLAST:NP_004248.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001136093.1 860 Q8WUH2 860 100% 0 0
NP_004248.2 860 Q8WUH2 860 100% 0 0

Chromosomal Locations for CCDS 2067.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 105267383 105267559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 105269272 105269705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 105272855 105273014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 105273544 105273690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 105275560 105275703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 105277614 105277671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 105280382 105280723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 105284316 105284398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 105296356 105296510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 105298511 105298705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 105307614 105308301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2583 nt):
ATGATGAGCATCAAAGCCTTTACGCTTGTCTCTGCTGTGGAGCGGGAGCTGCTGATGGGCGACAAGGAGC
GCGTCAACATAGAGTGCGTGGAGTGCTGCGGCAGGGACCTCTACGTGGGCACCAACGACTGCTTCGTCTA
CCACTTCCTGTTGGAGGAGAGGCCAGTGCCTGCTGGGCCAGCCACGTTCACTGCCACCAAACAGCTGCAG
AGACACTTGGGCTTCAAGAAGCCCGTGAACGAGCTGCGTGCGGCCTCAGCACTCAACAGGCTGCTGGTGC
TGTGTGACAACTCCATCAGCCTGGTCAACATGCTGAACCTCGAGCCAGTGCCTTCGGGGGCCCGCATCAA
GGGGGCAGCCACGTTTGCACTGAACGAGAACCCTGTGAGTGGGGACCCCTTCTGTGTAGAAGTTTGCATC
ATCTCTGTCAAACGCAGAACCATCCAGATGTTTCTGGTGTACGAGGACCGGGTGCAGATCGTCAAGGAGG
TGTCGACTGCCGAGCAGCCCCTCGCTGTGGCTGTGGACGGCCACTTCCTGTGTCTGGCTCTGACCACTCA
GTACATCATCCACAATTACAGCACAGGCGTCTCCCAGGACCTGTTTCCCTACTGCAGTGAGGAGAGGCCG
CCGATCGTCAAGAGGATAGGGAGACAGGAGTTCCTGCTGGCGGGCCCCGGAGGGCTGGGCATGTTTGCCA
CAGTCGCAGGGATATCCCAGCGCGCCCCCGTGCACTGGTCGGAGAATGTGATTGGGGCGGCTGTGTCCTT
TCCATACGTCATAGCGCTCGATGACGAATTCATCACAGTCCACAGCATGTTGGATCAGCAACAGAAGCAG
ACGCTGCCCTTTAAGGAGGGCCATATCCTACAGGACTTTGAAGGAAGAGTGATCGTTGCCACAAGTAAAG
GAGTTTACATCTTGGTTCCATTACCTTTGGAAAAACAAATACAGGATCTTCTAGCAAGCCGCAGAGTAGA
AGAGGCTTTGGTTTTAGCAAAAGGAGCCCGGAGGAACATTCCAAAGGAAAAATTTCAGGTAATGTACAGA
AGGATTCTGCAGCAGGCGGGATTTATACAGTTTGCACAACTTCAGTTCCTGGAAGCTAAAGAGCTCTTCA
GAAGCGGCCAGCTTGATGTCCGGGAGCTGATCTCTCTCTACCCCTTCCTGTTGCCCACCTCCTCCTCCTT
CACCCGGTCCCACCCTCCTCTTCATGAGTACGCAGACCTGAACCAGCTGACCCAGGGGGACCAGGAGAAG
ATGGCCAAGTGCAAACGCTTCCTCATGAGCTACCTGAACGAGGTCCGCAGCACAGAGGTAGCAAATGGCT
ACAAGGAGGACATCGACACAGCCTTGCTCAAACTGTATGCAGAGGCTGACCACGACAGCCTGCTGGACCT
CCTGGTCACTGAGAACTTCTGTCTTCTGACGGACAGTGCTGCCTGGCTAGAGAAGCACAAAAAGTATTTT
GCACTTGGACTGCTCTATCATTATAATAACCAAGATGCTGCTGCAGTTCAGTTGTGGGTGAACATTGTGA
ATGGCGATGTCCAGGACTCCACACGCTCAGACCTGTATGAATACATCGTGGATTTTCTTACCTACTGCTT
AGACGAGGAACTAGTGTGGGCCTATGCTGATTGGGTCCTGCAGAAAAGTGAAGAGGTCGGAGTTCAGGTT
TTCACCAAGAGACCTTTGGATGAACAGCAGAAGAACAGTTTTAATCCAGACGACATTATCAATTGCCTTA
AAAAATACCCTAAAGCCCTTGTGAAGTATCTGGAACATCTTGTGATAGACAAGAGACTGCAGAAAGAAGA
GTATCACACCCACTTAGCTGTGCTGTACCTGGAAGAGGTGCTGCTGCAGAGGGCCTCCGCCAGTGGCAAG
GGTGCAGAGGCCACCGAGACGCAGGCCAAGCTGCGGCGGCTGCTCCAGAAATCTGATTTATACCGAGTCC
ACTTTCTTCTCGAGAGGCTGCAGGGAGCTGGCCTGCCCATGGAGAGCGCCATCCTGCACGGGAAGCTGGG
CGAGCATGAGAAGGCGCTGCATATCCTGGTGCACGAGCTGCAGGACTTTGCAGCGGCCGAGGACTACTGC
CTGTGGTGCTCCGAGGGCCGAGACCCACCCCACCGCCAGCAACTCTTTCACACGCTGCTGGCCATCTACC
TGCATGCTGGCCCCACTGCCCACGAGCTGGCCGTGGCTGCCGTGGACCTGCTGAACCGCCACGCCACCGA
ATTTGATGCAGCCCAGGTGCTGCAGATGCTGCCTGACACCTGGTCAGTGCAGCTCCTCTGCCCATTCCTG
ATGGGGGCCATGAGGGACAGCATCCATGCCAGGAGGACCATGCAGGTGGCTCTCGGCCTGGCCAGGTCCG
AAAACTTAATCTACACCTACGATAAGATGAAGTTGAAAGGAAGCTCAATCCAACTCTCAGACAAAAAGCT
TTGTCAGATATGCCAAAATCCCTTTTGTGAGCCTGTGTTTGTTAGATACCCAAATGGTGGTCTTGTGCAC
ACCCACTGTGCCGCCAGCAGACACACAAACCCCAGCTCATCCAGTCCTGGCACTCGGACTTGA

Translation (860 aa):
MMSIKAFTLVSAVERELLMGDKERVNIECVECCGRDLYVGTNDCFVYHFLLEERPVPAGPATFTATKQLQ
RHLGFKKPVNELRAASALNRLLVLCDNSISLVNMLNLEPVPSGARIKGAATFALNENPVSGDPFCVEVCI
ISVKRRTIQMFLVYEDRVQIVKEVSTAEQPLAVAVDGHFLCLALTTQYIIHNYSTGVSQDLFPYCSEERP
PIVKRIGRQEFLLAGPGGLGMFATVAGISQRAPVHWSENVIGAAVSFPYVIALDDEFITVHSMLDQQQKQ
TLPFKEGHILQDFEGRVIVATSKGVYILVPLPLEKQIQDLLASRRVEEALVLAKGARRNIPKEKFQVMYR
RILQQAGFIQFAQLQFLEAKELFRSGQLDVRELISLYPFLLPTSSSFTRSHPPLHEYADLNQLTQGDQEK
MAKCKRFLMSYLNEVRSTEVANGYKEDIDTALLKLYAEADHDSLLDLLVTENFCLLTDSAAWLEKHKKYF
ALGLLYHYNNQDAAAVQLWVNIVNGDVQDSTRSDLYEYIVDFLTYCLDEELVWAYADWVLQKSEEVGVQV
FTKRPLDEQQKNSFNPDDIINCLKKYPKALVKYLEHLVIDKRLQKEEYHTHLAVLYLEEVLLQRASASGK
GAEATETQAKLRRLLQKSDLYRVHFLLERLQGAGLPMESAILHGKLGEHEKALHILVHELQDFAAAEDYC
LWCSEGRDPPHRQQLFHTLLAIYLHAGPTAHELAVAAVDLLNRHATEFDAAQVLQMLPDTWSVQLLCPFL
MGAMRDSIHARRTMQVALGLARSENLIYTYDKMKLKGSSIQLSDKKLCQICQNPFCEPVFVRYPNGGLVH
THCAASRHTNPSSSSPGTRT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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