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Report for CCDS2905.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2905.2 Public Homo sapiens 3 SLC25A26 24 110 108 CCDS HistoryNCBI Gene:115286Re-query CCDS DB by CCDS ID:2905.2Re-query CCDS DB by GeneID:115286See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 2905.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000354883.11 ENSP00000346955.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000354883.11Link to Ensembl Protein Viewer:ENSP00000346955.6Re-query CCDS DB by Nucleotide ID:ENST00000354883Re-query CCDS DB by Protein ID:ENSP00000346955
Original member Current member EBI ENST00000676754.1 ENSP00000504323.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000676754.1Link to Ensembl Protein Viewer:ENSP00000504323.1Re-query CCDS DB by Nucleotide ID:ENST00000676754Re-query CCDS DB by Protein ID:ENSP00000504323
Original member Current member NCBI NM_001379210.1 NP_001366139.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001379210.1Link to Protein Sequence:NP_001366139.1Re-query CCDS DB by Nucleotide ID:NM_001379210Re-query CCDS DB by Protein ID:NP_001366139Link to BLAST:NP_001366139.1
Original member Current member NCBI NM_173471.4 NP_775742.4 Accepted alive Link to Nucleotide Sequence:NM_173471.4Link to Protein Sequence:NP_775742.4Re-query CCDS DB by Nucleotide ID:NM_173471Re-query CCDS DB by Protein ID:NP_775742Link to BLAST:NP_775742.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001366139.1 274 Q70HW3-1 274 100% 0 0
NP_775742.4 274 Q70HW3-1 274 100% 0 0

Chromosomal Locations for CCDS 2905.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 66221095 66221127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 66236544 66236700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 66243203 66243312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 66262051 66262155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 66263332 66263379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 66346364 66346408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 66362860 66362929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 66369478 66369542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 66370529 66370602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 66377690 66377807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (825 nt):
ATGGACCGGCCGGGGTTCGTGGCAGCGCTGGTGGCTGGTGGGGTAGCAGGTGTTTCTGTTGACTTGATAT
TATTTCCTCTGGATACCATTAAAACCAGGCTGCAGAGTCCCCAAGGATTTAGTAAGGCTGGTGGTTTTCA
TGGAATATATGCTGGCGTTCCTTCTGCTGCTATTGGATCCTTTCCTAATGCTGCTGCATTTTTTATCACC
TATGAATATGTGAAGTGGTTTTTGCATGCTGATTCATCTTCATATTTGACACCTATGAAACATATGTTGG
CTGCCTCTGCTGGAGAAGTGGTTGCCTGCCTGATTCGAGTTCCATCTGAAGTGGTTAAGCAGAGGGCACA
GGTATCTGCTTCTACAAGAACATTTCAGATTTTCTCTAACATCTTATATGAAGAGGGTATCCAAGGGTTG
TATCGAGGCTATAAAAGCACAGTTTTAAGAGAGATTCCTTTTTCTTTGGTCCAGTTTCCCTTATGGGAGT
CCTTAAAAGCCCTCTGGTCCTGGAGGCAGGATCATGTGGTGGATTCTTGGCAGTCAGCAGTCTGTGGAGC
TTTTGCAGGTGGATTTGCCGCTGCAGTCACCACCCCTCTAGACGTGGCAAAGACAAGAATTACGCTGGCA
AAGGCTGGCTCCAGCACTGCTGATGGGAATGTGCTCTCTGTCCTGCATGGGGTCTGGCGGTCACAGGGGC
TGGCAGGATTATTTGCAGGTGTCTTCCCTCGAATGGCAGCCATCAGTCTGGGAGGTTTCATCTTTCTGGG
GGCTTATGACCGAACGCACAGCTTGCTGTTGGAAGTTGGCAGAAAGAGTCCTTGA

Translation (274 aa):
MDRPGFVAALVAGGVAGVSVDLILFPLDTIKTRLQSPQGFSKAGGFHGIYAGVPSAAIGSFPNAAAFFIT
YEYVKWFLHADSSSYLTPMKHMLAASAGEVVACLIRVPSEVVKQRAQVSASTRTFQIFSNILYEEGIQGL
YRGYKSTVLREIPFSLVQFPLWESLKALWSWRQDHVVDSWQSAVCGAFAGGFAAAVTTPLDVAKTRITLA
KAGSSTADGNVLSVLHGVWRSQGLAGLFAGVFPRMAAISLGGFIFLGAYDRTHSLLLEVGRKSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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