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Report for CCDS3945.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3945.1 Public Homo sapiens 5 TMEM267 24 110 108 CCDS HistoryNCBI Gene:64417Re-query CCDS DB by CCDS ID:3945.1Re-query CCDS DB by GeneID:64417See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3945.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000397080.8 ENSP00000380270.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000397080.8Link to Ensembl Protein Viewer:ENSP00000380270.3Re-query CCDS DB by Nucleotide ID:ENST00000397080Re-query CCDS DB by Protein ID:ENSP00000380270
Original member Current member EBI ENST00000512085.5 ENSP00000422881.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000512085.5Link to Ensembl Protein Viewer:ENSP00000422881.1Re-query CCDS DB by Nucleotide ID:ENST00000512085Re-query CCDS DB by Protein ID:ENSP00000422881
Original member Current member EBI ENST00000500337.6 ENSP00000426067.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000500337.6Link to Ensembl Protein Viewer:ENSP00000426067.1Re-query CCDS DB by Nucleotide ID:ENST00000500337Re-query CCDS DB by Protein ID:ENSP00000426067
Original member Current member NCBI NM_001377394.1 NP_001364323.1 Accepted alive Link to Nucleotide Sequence:NM_001377394.1Link to Protein Sequence:NP_001364323.1Re-query CCDS DB by Nucleotide ID:NM_001377394Re-query CCDS DB by Protein ID:NP_001364323Link to BLAST:NP_001364323.1
Original member Current member NCBI NM_001377395.1 NP_001364324.1 Accepted alive Link to Nucleotide Sequence:NM_001377395.1Link to Protein Sequence:NP_001364324.1Re-query CCDS DB by Nucleotide ID:NM_001377395Re-query CCDS DB by Protein ID:NP_001364324Link to BLAST:NP_001364324.1
Original member Current member NCBI NM_001377396.1 NP_001364325.1 Accepted alive Link to Nucleotide Sequence:NM_001377396.1Link to Protein Sequence:NP_001364325.1Re-query CCDS DB by Nucleotide ID:NM_001377396Re-query CCDS DB by Protein ID:NP_001364325Link to BLAST:NP_001364325.1
Original member Current member NCBI NM_001377397.1 NP_001364326.1 Accepted alive Link to Nucleotide Sequence:NM_001377397.1Link to Protein Sequence:NP_001364326.1Re-query CCDS DB by Nucleotide ID:NM_001377397Re-query CCDS DB by Protein ID:NP_001364326Link to BLAST:NP_001364326.1
Original member Current member NCBI NM_001377398.1 NP_001364327.1 Accepted alive Link to Nucleotide Sequence:NM_001377398.1Link to Protein Sequence:NP_001364327.1Re-query CCDS DB by Nucleotide ID:NM_001377398Re-query CCDS DB by Protein ID:NP_001364327Link to BLAST:NP_001364327.1
Original member Current member NCBI NM_001377399.1 NP_001364328.1 Accepted alive Link to Nucleotide Sequence:NM_001377399.1Link to Protein Sequence:NP_001364328.1Re-query CCDS DB by Nucleotide ID:NM_001377399Re-query CCDS DB by Protein ID:NP_001364328Link to BLAST:NP_001364328.1
Original member Current member NCBI NM_001377400.1 NP_001364329.1 Accepted alive Link to Nucleotide Sequence:NM_001377400.1Link to Protein Sequence:NP_001364329.1Re-query CCDS DB by Nucleotide ID:NM_001377400Re-query CCDS DB by Protein ID:NP_001364329Link to BLAST:NP_001364329.1
Original member Current member NCBI NM_001377401.1 NP_001364330.1 Accepted alive Link to Nucleotide Sequence:NM_001377401.1Link to Protein Sequence:NP_001364330.1Re-query CCDS DB by Nucleotide ID:NM_001377401Re-query CCDS DB by Protein ID:NP_001364330Link to BLAST:NP_001364330.1
Original member Current member NCBI NM_001377402.1 NP_001364331.1 Accepted alive Link to Nucleotide Sequence:NM_001377402.1Link to Protein Sequence:NP_001364331.1Re-query CCDS DB by Nucleotide ID:NM_001377402Re-query CCDS DB by Protein ID:NP_001364331Link to BLAST:NP_001364331.1
Original member Current member NCBI NM_001377403.1 NP_001364332.1 Accepted alive Link to Nucleotide Sequence:NM_001377403.1Link to Protein Sequence:NP_001364332.1Re-query CCDS DB by Nucleotide ID:NM_001377403Re-query CCDS DB by Protein ID:NP_001364332Link to BLAST:NP_001364332.1
Original member Current member NCBI NM_022483.5 NP_071928.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022483.5Link to Protein Sequence:NP_071928.2Re-query CCDS DB by Nucleotide ID:NM_022483Re-query CCDS DB by Protein ID:NP_071928Link to BLAST:NP_071928.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001364323.1 215 Q0VDI3 215 100% 0 0
NP_001364324.1 215 Q0VDI3 215 100% 0 0
NP_001364325.1 215 Q0VDI3 215 100% 0 0
NP_001364326.1 215 Q0VDI3 215 100% 0 0
NP_001364327.1 215 Q0VDI3 215 100% 0 0
NP_001364328.1 215 Q0VDI3 215 100% 0 0
NP_001364329.1 215 Q0VDI3 215 100% 0 0
NP_001364330.1 215 Q0VDI3 215 100% 0 0
NP_001364331.1 215 Q0VDI3 215 100% 0 0
NP_001364332.1 215 Q0VDI3 215 100% 0 0
NP_071928.2 215 Q0VDI3 215 100% 0 0

Chromosomal Locations for CCDS 3945.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 43446222 43446557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43453658 43453969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (648 nt):
ATGGCATCCGAGACTGAAAAGACCCATGCTTTACTGCAGACTTGTAGCACTGAATCTCTTATTTCCAGCC
TTGGTCTGGGGGCATTTTGCCTCGTAGCTGACAGACTTCTTCAGTTTTCCACAATTCAGCAAAATGACTG
GCTTCGTGCTCTCTCAGATAATGCAGTACATTGTGTAATTGGCATGTGGTCATGGGCGGTAGTCACTGGA
ATCAAGAAGAAGACTGACTTTGGAGAAATCATTTTAGCTGGATTTTTAGCCTCTGTTATTGATGTAGACC
ACTTTTTTCTAGCTGGATCCATGTCTTTAAAGGCTGCTTTGACTCTCCCGCGAAGACCTTTCCTTCACTG
TTCTACTGTGATTCCCGTTGTGGTTCTGACCCTGAAATTTACTATGCACCTTTTCAAGCTCAAAGACTCA
TGGTGCTTTCTTCCCTGGATGTTATTTATATCCTGGACTTCACATCATATCCGAGATGGGATTCGTCATG
GTTTGTGGATATGCCCATTTGGAAAAACTTCTCCTTTGCCATTCTGGCTTTATGTAATAATCACATCATC
TTTACCTCACATCTGTTCATTCGTTATGTATTTAACAGGAACCAGACAAATGATGTCTTCAAAACATGGA
GTTCGTATTGATGTCTGA

Translation (215 aa):
MASETEKTHALLQTCSTESLISSLGLGAFCLVADRLLQFSTIQQNDWLRALSDNAVHCVIGMWSWAVVTG
IKKKTDFGEIILAGFLASVIDVDHFFLAGSMSLKAALTLPRRPFLHCSTVIPVVVLTLKFTMHLFKLKDS
WCFLPWMLFISWTSHHIRDGIRHGLWICPFGKTSPLPFWLYVIITSSLPHICSFVMYLTGTRQMMSSKHG
VRIDV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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