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Report for CCDS3953.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3953.1 Public Homo sapiens 5 EMB 24 110 108 CCDS HistoryNCBI Gene:133418Re-query CCDS DB by CCDS ID:3953.1Re-query CCDS DB by GeneID:133418See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3953.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000303221.10 ENSP00000302289.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000303221.10Link to Ensembl Protein Viewer:ENSP00000302289.5Re-query CCDS DB by Nucleotide ID:ENST00000303221Re-query CCDS DB by Protein ID:ENSP00000302289
Original member Current member NCBI NM_198449.3 NP_940851.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198449.3Link to Protein Sequence:NP_940851.1Re-query CCDS DB by Nucleotide ID:NM_198449Re-query CCDS DB by Protein ID:NP_940851Link to BLAST:NP_940851.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_940851.1 327 Q6PCB8-1 327 100% 0 0

Chromosomal Locations for CCDS 3953.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 50399273 50399290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 50399859 50399913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 50402286 50402319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 50403178 50403454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 50405725 50405852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 50410877 50410965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 50411197 50411383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 50428144 50428227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 50441040 50441151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (984 nt):
ATGCGCGCCCTCCCCGGCCTGCTGGAGGCCAGGGCGCGTACGCCCCGGCTGCTCCTCCTCCAGTGCCTTC
TCGCTGCCGCGCGCCCAAGCTCGGCGGACGGCAGTGCCCCAGATTCGCCTTTTACAAGTCCACCTCTCAG
AGAAGAAATAATGGCAAATAACTTTTCCTTGGAGAGTCATAACATATCACTGACTGAACATTCTAGTATG
CCAGTAGAAAAAAATATCACTTTAGAAAGGCCTTCTAATGTAAATCTCACATGCCAGTTCACAACATCTG
GGGATTTGAATGCAGTAAATGTGACTTGGAAAAAAGATGGTGAACAACTTGAGAATAATTATCTTGTCAG
TGCAACAGGAAGCACCTTGTATACCCAATACAGGTTCACCATCATTAATAGCAAACAAATGGGAAGTTAT
TCTTGTTTCTTTCGAGAGGAAAAGGAACAAAGGGGAACATTTAATTTCAAAGTCCCTGAACTTCATGGGA
AAAACAAGCCATTGATCTCTTACGTAGGGGATTCTACTGTCTTGACATGTAAATGTCAAAATTGTTTTCC
TTTAAATTGGACCTGGTACAGTAGTAATGGGAGTGTAAAGGTTCCTGTTGGTGTTCAAATGAATAAATAT
GTGATCAATGGAACATATGCTAACGAAACAAAGCTGAAGATAACACAACTTTTGGAGGAAGATGGGGAAT
CTTACTGGTGCCGTGCACTATTCCAATTAGGCGAGAGTGAAGAACACATTGAGCTTGTGGTGCTGAGCTA
TTTGGTGCCCCTCAAACCATTTCTTGTAATAGTGGCTGAGGTGATTCTTTTAGTGGCCACCATTCTGCTT
TGTGAAAAGTACACACAAAAGAAAAAGAAGCACTCAGATGAGGGGAAAGAATTTGAGCAGATTGAACAGC
TGAAATCAGATGATAGCAATGGTATAGAAAATAATGTCCCCAGGCATAGAAAAAATGAGTCTCTGGGCCA
GTGA

Translation (327 aa):
MRALPGLLEARARTPRLLLLQCLLAAARPSSADGSAPDSPFTSPPLREEIMANNFSLESHNISLTEHSSM
PVEKNITLERPSNVNLTCQFTTSGDLNAVNVTWKKDGEQLENNYLVSATGSTLYTQYRFTIINSKQMGSY
SCFFREEKEQRGTFNFKVPELHGKNKPLISYVGDSTVLTCKCQNCFPLNWTWYSSNGSVKVPVGVQMNKY
VINGTYANETKLKITQLLEEDGESYWCRALFQLGESEEHIELVVLSYLVPLKPFLVIVAEVILLVATILL
CEKYTQKKKKHSDEGKEFEQIEQLKSDDSNGIENNVPRHRKNESLGQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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