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Report for CCDS46353.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46353.1 Public Homo sapiens 2 GGCX 24 110 108 CCDS HistoryNCBI Gene:2677Re-query CCDS DB by CCDS ID:46353.1Re-query CCDS DB by GeneID:2677See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46353.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000430215.7 ENSP00000408045.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000430215.7Link to Ensembl Protein Viewer:ENSP00000408045.3Re-query CCDS DB by Nucleotide ID:ENST00000430215Re-query CCDS DB by Protein ID:ENSP00000408045
Original member Current member NCBI NM_001142269.4 NP_001135741.1 Accepted alive Link to Nucleotide Sequence:NM_001142269.4Link to Protein Sequence:NP_001135741.1Re-query CCDS DB by Nucleotide ID:NM_001142269Re-query CCDS DB by Protein ID:NP_001135741Link to BLAST:NP_001135741.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001135741.1 701 P38435-2 701 100% 0 0

Chromosomal Locations for CCDS 46353.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 85549934 85550126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 85550555 85550750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 85550925 85551072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 85551480 85551610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 85551812 85551981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 85552416 85552567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 85552939 85553070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 85553232 85553497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 85554143 85554306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 85555484 85555590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 85556182 85556260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 85558440 85558605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 85558917 85559075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 85561386 85561428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2106 nt):
ATGGCGGTGTCTGCCGGGTCCGCGCGGACCTCGCCCAGCTCAGGGTTCTTGATGGTGCTAGACATTCCCC
AGGAGCGGGGGCTCAGCTCTCTGGACCGGAAATACCTTGATGGGCTGGATGTGTGCCGCTTCCCCTTGCT
GGATGCCCTACGCCCACTGCCACTTGACTGGATGTATCTTGTCTACACCATCATGTTTCTGGGGGCACTG
GGCATGATGCTGGGCCTGTGCTACCGGATAAGCTGTGTGTTATTCCTGCTGCCATACTGGTATGTGTTTC
TCCTGGACAAGACATCATGGAACAACCACTCCTATCTGTATGGGTTGTTGGCCTTTCAGCTAACATTCAT
GGATGCAAACCACTACTGGTCTGTGGACGGTCTGCTGAATGCCCATAGGAGGAATGCCCACGTGCCCCTT
TGGAACTATGCAGTGCTCCGTGGCCAGATCTTCATTGTGTACTTCATTGCGGGTGTGAAAAAGCTGGATG
CAGACTGGGTTGAAGGCTATTCCATGGAATATTTGTCCCGGCACTGGCTCTTCAGTCCCTTCAAACTGCT
GTTGTCTGAGGAGCTGACTAGCCTGCTGGTCGTGCACTGGGGTGGGCTGCTGCTTGACCTCTCAGCTGGT
TTCCTGCTCTTTTTTGATGTCTCAAGATCCATTGGCCTGTTCTTTGTGTCCTACTTCCACTGCATGAATT
CCCAGCTTTTCAGCATTGGTATGTTCTCCTACGTCATGCTGGCCAGCAGCCCTCTCTTCTGCTCCCCTGA
GTGGCCTCGGAAGCTGGTGTCCTACTGCCCCCGAAGGTTGCAACAACTGTTGCCCCTCAAGGCAGCCCCT
CAGCCCAGTGTTTCCTGTGTGTATAAGAGGAGCCGGGGCAAAAGTGGCCAGAAGCCAGGGCTGCGCCATC
AGCTGGGAGCTGCCTTCACCCTGCTCTACCTCCTGGAGCAGCTATTCCTGCCCTATTCTCATTTTCTCAC
CCAGGGCTATAACAACTGGACAAATGGGCTGTATGGCTATTCCTGGGACATGATGGTGCACTCCCGCTCC
CACCAGCACGTGAAGATCACCTACCGTGATGGCCGCACTGGCGAACTGGGCTACCTTAACCCTGGGGTAT
TTACACAGAGTCGGCGATGGAAGGATCATGCAGACATGCTGAAGCAATATGCCACTTGCCTGAGCCGCCT
GCTTCCCAAGTATAATGTCACTGAGCCCCAGATCTACTTTGATATTTGGGTCTCCATCAATGACCGCTTC
CAGCAGAGGATTTTTGACCCTCGTGTGGACATCGTGCAGGCCGCTTGGTCACCCTTTCAGCGCACATCCT
GGGTGCAACCACTCTTGATGGACCTGTCTCCCTGGAGGGCCAAGTTACAGGAAATCAAGAGCAGCCTAGA
CAACCACACTGAGGTGGTCTTCATTGCAGATTTCCCTGGACTGCACTTGGAGAATTTTGTGAGTGAAGAC
CTGGGCAACACTAGCATCCAGCTGCTGCAGGGGGAAGTGACTGTGGAGCTTGTGGCAGAACAGAAGAACC
AGACTCTTCGAGAGGGAGAAAAAATGCAGTTGCCTGCTGGTGAGTACCATAAGGTGTATACGACATCACC
TAGCCCTTCTTGCTACATGTACGTCTATGTCAACACTACAGAGCTTGCACTGGAGCAAGACCTGGCATAT
CTGCAAGAATTAAAGGAAAAGGTGGAGAATGGAAGTGAAACAGGGCCTCTACCCCCAGAGCTGCAGCCTC
TGTTGGAAGGGGAAGTAAAAGGGGGCCCTGAGCCAACACCTCTGGTTCAGACCTTTCTTAGACGCCAACA
AAGGCTCCAGGAGATTGAACGCCGGCGAAATACTCCTTTCCATGAGCGATTCTTCCGCTTCTTGTTGCGA
AAGCTCTATGTCTTTCGCCGCAGCTTCCTGATGACTTGTATCTCACTTCGAAATCTGATATTAGGCCGTC
CTTCCCTGGAGCAGCTGGCCCAGGAGGTGACTTATGCAAACTTGAGACCCTTTGAGGCAGTTGGAGAACT
GAATCCCTCAAACACGGATTCTTCACATTCTAATCCTCCTGAGTCAAATCCTGATCCTGTCCACTCAGAG
TTCTGA

Translation (701 aa):
MAVSAGSARTSPSSGFLMVLDIPQERGLSSLDRKYLDGLDVCRFPLLDALRPLPLDWMYLVYTIMFLGAL
GMMLGLCYRISCVLFLLPYWYVFLLDKTSWNNHSYLYGLLAFQLTFMDANHYWSVDGLLNAHRRNAHVPL
WNYAVLRGQIFIVYFIAGVKKLDADWVEGYSMEYLSRHWLFSPFKLLLSEELTSLLVVHWGGLLLDLSAG
FLLFFDVSRSIGLFFVSYFHCMNSQLFSIGMFSYVMLASSPLFCSPEWPRKLVSYCPRRLQQLLPLKAAP
QPSVSCVYKRSRGKSGQKPGLRHQLGAAFTLLYLLEQLFLPYSHFLTQGYNNWTNGLYGYSWDMMVHSRS
HQHVKITYRDGRTGELGYLNPGVFTQSRRWKDHADMLKQYATCLSRLLPKYNVTEPQIYFDIWVSINDRF
QQRIFDPRVDIVQAAWSPFQRTSWVQPLLMDLSPWRAKLQEIKSSLDNHTEVVFIADFPGLHLENFVSED
LGNTSIQLLQGEVTVELVAEQKNQTLREGEKMQLPAGEYHKVYTTSPSPSCYMYVYVNTTELALEQDLAY
LQELKEKVENGSETGPLPPELQPLLEGEVKGGPEPTPLVQTFLRRQQRLQEIERRRNTPFHERFFRFLLR
KLYVFRRSFLMTCISLRNLILGRPSLEQLAQEVTYANLRPFEAVGELNPSNTDSSHSNPPESNPDPVHSE
F


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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