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Report for CCDS4685.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4685.1 Public Homo sapiens 6 DHX16 24 110 108 CCDS HistoryNCBI Gene:8449Re-query CCDS DB by CCDS ID:4685.1Re-query CCDS DB by GeneID:8449See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4685.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000376442.8 ENSP00000365625.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000376442.8Link to Ensembl Protein Viewer:ENSP00000365625.3Re-query CCDS DB by Nucleotide ID:ENST00000376442Re-query CCDS DB by Protein ID:ENSP00000365625
Original member Current member NCBI NM_003587.5 NP_003578.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003587.5Link to Protein Sequence:NP_003578.2Re-query CCDS DB by Nucleotide ID:NM_003587Re-query CCDS DB by Protein ID:NP_003578Link to BLAST:NP_003578.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003578.2 1041 O60231 1041 100% 0 0

Chromosomal Locations for CCDS 4685.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 30653242 30653370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30654706 30654879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30655175 30655336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30655435 30655597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30656198 30656265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30656391 30656509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30656597 30656759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30656952 30657092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30659472 30659624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30659736 30659834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30660032 30660242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30662627 30662742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30662911 30663021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30664801 30664992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30665071 30665274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30665479 30665733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30670410 30670466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30670790 30670952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30671036 30671274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30672635 30672841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3126 nt):
ATGGCGACGCCGGCGGGTCTGGAGCGCTGGGTTCAGGACGAGCTGCACTCGGTGTTGGGGCTGAGCGAGC
GGCACGTCGCCCAGTTTCTGATCGGTACCGCACAGCGCTGCACCTCTGCCGAGGAGTTCGTGCAGCGCCT
ACGAGACACTGATACCTTGGATCTCAGTGGGCCGGCCCGGGACTTCGCCCTGAGACTCTGGAACAAGGTA
CCACGAAAGGCAGTGGTAGAAAAGCCAGCTCGGGCAGCAGAGCGAGAGGCCCGGGCCCTGCTGGAGAAGA
ACCGATCTTATAGGTTACTGGAAGACAGTGAAGAGAGCAGTGAGGAGACTGTGAGTAGGGCTGGAAGCAG
CCTCCAGAAGAAACGTAAAAAGCGGAAACACCTCAGGAAGAAGCGTGAGGAAGAAGAGGAGGAAGAGGCT
TCTGAGAAAGGGAAGAAGAAAACAGGGGGGAGTAAACAGCAGACAGAGAAGCCAGAGTCGGAAGATGAGT
GGGAACGGACAGAGCGTGAACGCCTTCAGGACCTGGAGGAGCGTGATGCCTTTGCTGAGCGGGTTCGACA
GCGGGACAAGGATCGGACTCGAAATGTCCTGGAACGGTCAGACAAGAAGGCTTATGAAGAGGCTCAGAAG
CGCCTCAAGATGGCCGAGGAAGACCGGAAGGCCATGGTCCCTGAGCTGCGGAAGAAATCTCGCCGAGAGT
ACCTGGCTAAGCGGGAGCGAGAGAAGCTTGAGGACCTGGAGGCGGAGCTGGCTGATGAGGAGTTCCTTTT
TGGGGACGTGGAGCTGAGCCGGCACGAGCGGCAGGAGCTCAAATATAAGCGGCGAGTGCGGGATCTCGCC
CGGGAGTACCGGGCAGCTGGGGAGCAGGAGAAGCTGGAGGCCACCAATCGCTACCACATGCCCAAGGAAA
CCCGAGGACAGCCAGCCCGAGCTGTGGATCTAGTGGAGGAGGAATCAGGAGCCCCTGGGGAGGAGCAGCG
GCGCTGGGAGGAGGCGCGGCTTGGGGCAGCGTCCCTGAAGTTTGGGGCCCGAGATGCTGCCTCTCAGGAG
CCCAAGTATCAACTGGTGCTGGAGGAGGAGGAGACCATTGAGTTTGTCCGGGCCACTCAGCTCCAGGGTG
ATGAGGAGCCGTCAGCTCCACCCACTTCAACTCAGGCCCAGCAGAAAGAGTCCATCCAGGCCGTCCGCCG
CAGCCTCCCGGTGTTCCCATTTCGAGAGGAGCTCCTGGCTGCTATTGCAAATCACCAAGTCCTCATCATT
GAAGGCGAGACAGGCTCAGGGAAGACCACCCAGATCCCGCAGTATCTCTTTGAGGAGGGTTATACAAACA
AGGGTATGAAGATTGCCTGCACCCAACCCCGGAGAGTGGCTGCCATGAGTGTGGCCGCCCGAGTGGCCCG
GGAGATGGGTGTGAAGCTTGGGAATGAGGTTGGCTACAGCATCCGCTTTGAGGACTGCACATCAGAGCGA
ACTGTCCTCCGCTACATGACAGATGGGATGCTTCTCCGGGAGTTCCTCTCTGAGCCTGACCTGGCGAGTT
ACAGCGTGGTGATGGTGGATGAGGCACACGAAAGGACCCTACACACAGACATTCTCTTTGGATTGATCAA
GGATGTTGCTCGCTTCCGACCTGAGCTCAAGGTCCTGGTGGCTTCAGCCACAATGGACACTGCCCGTTTT
TCCACCTTCTTTGATGACGCCCCTGTGTTTCGAATCCCCGGACGCAGGTTTCCTGTGGACATCTTCTACA
CCAAGGCTCCAGAGGCTGACTACTTGGAAGCTTGTGTAGTATCTGTGTTGCAGATCCATGTGACCCAGCC
CCCTGGGGATATCCTGGTGTTCCTGACAGGACAGGAGGAGATTGAGGCTGCCTGTGAGATGCTCCAGGAT
CGCTGCCGCCGCCTGGGCTCCAAAATCCGGGAGCTCCTGGTGCTGCCCATTTATGCCAATCTGCCCTCTG
ACATGCAGGCCCGTATCTTCCAGCCCACACCACCTGGGGCACGAAAGGTGGTTGTGGCAACGAACATTGC
TGAGACATCACTCACCATTGAGGGCATCATTTATGTGCTGGATCCAGGGTTCTGTAAGCAGAAGAGCTAC
AACCCCCGCACAGGCATGGAATCGCTCACTGTCACACCCTGCAGCAAGGCCTCAGCCAATCAGCGAGCTG
GCAGGGCAGGTCGGGTGGCTGCAGGGAAGTGCTTCCGCCTGTATACCGCCTGGGCCTATCAGCACGAGCT
TGAGGAAACCACAGTGCCTGAGATCCAGAGGACCAGCTTGGGCAATGTCGTGTTGCTGCTCAAGAGCTTA
GGGATCCATGACCTAATGCACTTTGATTTCCTGGACCCTCCACCATATGAGACACTGCTGCTGGCTTTGG
AGCAGCTGTATGCTCTGGGAGCCCTCAACCACCTTGGGGAGCTCACCACGTCTGGTCGAAAGATGGCAGA
GCTGCCGGTGGACCCCATGCTGTCCAAAATGATCTTAGCCTCTGAGAAGTACAGCTGTTCAGAGGAGATC
CTGACAGTGGCTGCCATGCTCTCTGTCAACAACTCCATCTTCTACCGACCAAAGGACAAGGTCGTCCATG
CTGACAATGCCCGTGTCAACTTCTTTCTCCCTGGCGGTGACCACCTGGTTCTGCTAAATGTTTACACACA
GTGGGCTGAGAGTGGTTACTCTTCCCAGTGGTGCTATGAGAACTTTGTACAGTTCAGATCGATGCGCCGA
GCCCGGGATGTGCGGGAACAGCTGGAAGGGCTCTTGGAACGTGTGGAAGTTGGTCTCAGTTCCTGCCAGG
GGGACTATATCCGTGTACGCAAGGCCATCACTGCTGGTTACTTTTACCACACGGCACGGTTGACTCGGAG
TGGCTACCGCACAGTGAAACAGCAGCAGACAGTCTTCATTCATCCCAACTCCTCCCTCTTTGAGCAACAG
CCACGCTGGCTGCTCTACCACGAACTTGTCTTGACCACCAAAGAGTTCATGAGACAGGTACTGGAGATTG
AGAGCAGTTGGCTTCTGGAGGTGGCTCCCCATTATTATAAGGCCAAGGAGCTAGAAGATCCCCATGCTAA
GAAAATGCCCAAAAAAATAGGCAAAACACGAGAAGAGCTAGGGTAA

Translation (1041 aa):
MATPAGLERWVQDELHSVLGLSERHVAQFLIGTAQRCTSAEEFVQRLRDTDTLDLSGPARDFALRLWNKV
PRKAVVEKPARAAEREARALLEKNRSYRLLEDSEESSEETVSRAGSSLQKKRKKRKHLRKKREEEEEEEA
SEKGKKKTGGSKQQTEKPESEDEWERTERERLQDLEERDAFAERVRQRDKDRTRNVLERSDKKAYEEAQK
RLKMAEEDRKAMVPELRKKSRREYLAKREREKLEDLEAELADEEFLFGDVELSRHERQELKYKRRVRDLA
REYRAAGEQEKLEATNRYHMPKETRGQPARAVDLVEEESGAPGEEQRRWEEARLGAASLKFGARDAASQE
PKYQLVLEEEETIEFVRATQLQGDEEPSAPPTSTQAQQKESIQAVRRSLPVFPFREELLAAIANHQVLII
EGETGSGKTTQIPQYLFEEGYTNKGMKIACTQPRRVAAMSVAARVAREMGVKLGNEVGYSIRFEDCTSER
TVLRYMTDGMLLREFLSEPDLASYSVVMVDEAHERTLHTDILFGLIKDVARFRPELKVLVASATMDTARF
STFFDDAPVFRIPGRRFPVDIFYTKAPEADYLEACVVSVLQIHVTQPPGDILVFLTGQEEIEAACEMLQD
RCRRLGSKIRELLVLPIYANLPSDMQARIFQPTPPGARKVVVATNIAETSLTIEGIIYVLDPGFCKQKSY
NPRTGMESLTVTPCSKASANQRAGRAGRVAAGKCFRLYTAWAYQHELEETTVPEIQRTSLGNVVLLLKSL
GIHDLMHFDFLDPPPYETLLLALEQLYALGALNHLGELTTSGRKMAELPVDPMLSKMILASEKYSCSEEI
LTVAAMLSVNNSIFYRPKDKVVHADNARVNFFLPGGDHLVLLNVYTQWAESGYSSQWCYENFVQFRSMRR
ARDVREQLEGLLERVEVGLSSCQGDYIRVRKAITAGYFYHTARLTRSGYRTVKQQQTVFIHPNSSLFEQQ
PRWLLYHELVLTTKEFMRQVLEIESSWLLEVAPHYYKAKELEDPHAKKMPKKIGKTREELG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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