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Report for CCDS46893.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46893.1 Public Homo sapiens 3 PARP15 24 110 108 CCDS HistoryNCBI Gene:165631Re-query CCDS DB by CCDS ID:46893.1Re-query CCDS DB by GeneID:165631See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46893.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000464300.7 ENSP00000417214.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000464300.7Link to Ensembl Protein Viewer:ENSP00000417214.2Re-query CCDS DB by Nucleotide ID:ENST00000464300Re-query CCDS DB by Protein ID:ENSP00000417214
Original member Current member NCBI NM_001113523.3 NP_001106995.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001113523.3Link to Protein Sequence:NP_001106995.1Re-query CCDS DB by Nucleotide ID:NM_001113523Re-query CCDS DB by Protein ID:NP_001106995Link to BLAST:NP_001106995.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001106995.1 678 Q460N3-1 678 100% 0 0

Chromosomal Locations for CCDS 46893.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 122577668 122577853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122605936 122606055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122610494 122610730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122613041 122613268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122615779 122615857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122617015 122617164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122619781 122619843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122621444 122621611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122626827 122627033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122632086 122632219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122635020 122635194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122635811 122636100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2037 nt):
ATGGCTGCGCCAGGCCCCCTTCCTGCCGCTGCTCTGAGTCCAGGGGCTCCGACCCCCAGAGAACTTATGC
ACGGAGTTGCAGGTGTTACTTCCAGAGCCGGACGAGATCGGGAGGCGGGGAGCGTGCTGCCGGCCGGGAA
CCGTGGGGCGCGGAAGGCCTCCCGGCGCTCTTCCTCCCGGAGTATGTCCAGAGACAACAAGTTCAGCAAG
AAAGATTGTCTTTCAATCAGGAATGTTGTAGCTTCAATCCAAACCAAAGAAGGTCTGAATCTCAAGTTGA
TAAGTGGAGATGTTCTGTACATCTGGGCCGATGTCATTGTCAACAGCGTTCCCATGAATCTTCAGCTTGG
AGGAGGACCACTATCTCGGGCATTTTTGCAGAAAGCTGGTCCCATGCTCCAGAAAGAGTTAGATGACAGA
AGGCGGGAAACAGAGGAAAAAGTAGGTAACATATTCATGACAAGCGGCTGCAATCTGGACTGCAAAGCTG
TGCTCCATGCTGTGGCTCCATACTGGAATAATGGAGCAGAGACTTCTTGGCAGATCATGGCAAATATAAT
CAAGAAATGTTTGACAACTGTAGAAGTGCTATCTTTCTCATCAATCACATTTCCCATGATTGGAACAGGA
AGTTTGCAGTTTCCCAAAGCTGTTTTTGCTAAACTAATCCTTTCAGAAGTGTTCGAATACAGTAGCAGCA
CAAGGCCGATAACTAGCCCTTTACAAGAAGTCCACTTTCTGGTATATACAAATGACGATGAAGGCTGTCA
GGCATTTTTAGATGAATTCACTAACTGGTCAAGAATAAATCCCAACAAGGCCAGGATTCCCATGGCAGGA
GATACCCAAGGTGTGGTCGGGACTGTCTCTAAGCCTTGTTTCACAGCATATGAAATGAAAATCGGTGCAA
TTACTTTTCAGGTTGCTACTGGAGATATAGCCACTGAACAGGTAGATGTTATTGTAAACTCAACAGCAAG
GACATTTAATCGGAAATCAGGTGTGTCAAGAGCTATTTTAGAAGGTGCTGGACAAGCTGTGGAAAGTGAA
TGTGCTGTACTAGCTGCACAGCCTCACAGAGATTTTATAATTACACCAGGTGGATGCTTAAAGTGCAAAA
TAATAATTCATGTTCCTGGGGGAAAAGATGTCAGGAAAACGGTCACCAGTGTTCTAGAAGAGTGTGAACA
GAGGAAGTACACATCGGTTTCCCTTCCAGCCATTGGAACAGGAAATGCCGGAAAAAACCCTATCACAGTT
GCTGATAACATAATCGATGCTATTGTAGACTTCTCATCACAACATTCCACCCCATCATTAAAAACAGTTA
AAGTTGTCATTTTTCAACCTGAGCTGCTAAATATATTCTACGACAGCATGAAAAAAAGAGACCTCTCTGC
ATCACTGAACTTTCAGTCCACATTCTCCATGACTACATGTAATCTTCCTGAACACTGGACTGACATGAAT
CATCAGCTGTTTTGCATGGTCCAGCTAGAGCCAGGACAATCAGAATATAATACCATAAAGGACAAGTTCA
CCCGAACTTGTTCTTCCTACGCAATAGAGAAGATTGAGAGGATACAGAATGCATTTCTCTGGCAGAGCTA
CCAGGTAAAGAAAAGGCAAATGGATATCAAGAATGACCATAAGAATAATGAGAGACTCCTCTTCCATGGG
ACAGATGCAGACTCAGTGCCATATGTCAATCAGCACGGCTTTAATAGAAGTTGTGCTGGGAAAAATGCTG
TATCCTATGGAAAAGGAACCTATTTTGCTGTGGATGCCAGTTATTCTGCCAAGGACACCTACTCCAAGCC
AGACAGCAATGGGAGAAAGCACATGTACGTTGTGCGAGTACTTACTGGAGTCTTCACAAAGGGACGTGCA
GGATTAGTCACCCCTCCACCCAAGAATCCTCACAATCCCACAGATCTCTTTGACTCAGTGACAAACAATA
CACGATCTCCAAAGCTATTTGTGGTATTCTTTGATAATCAGGCTTACCCAGAATATCTCATAACTTTCAC
GGCTTAA

Translation (678 aa):
MAAPGPLPAAALSPGAPTPRELMHGVAGVTSRAGRDREAGSVLPAGNRGARKASRRSSSRSMSRDNKFSK
KDCLSIRNVVASIQTKEGLNLKLISGDVLYIWADVIVNSVPMNLQLGGGPLSRAFLQKAGPMLQKELDDR
RRETEEKVGNIFMTSGCNLDCKAVLHAVAPYWNNGAETSWQIMANIIKKCLTTVEVLSFSSITFPMIGTG
SLQFPKAVFAKLILSEVFEYSSSTRPITSPLQEVHFLVYTNDDEGCQAFLDEFTNWSRINPNKARIPMAG
DTQGVVGTVSKPCFTAYEMKIGAITFQVATGDIATEQVDVIVNSTARTFNRKSGVSRAILEGAGQAVESE
CAVLAAQPHRDFIITPGGCLKCKIIIHVPGGKDVRKTVTSVLEECEQRKYTSVSLPAIGTGNAGKNPITV
ADNIIDAIVDFSSQHSTPSLKTVKVVIFQPELLNIFYDSMKKRDLSASLNFQSTFSMTTCNLPEHWTDMN
HQLFCMVQLEPGQSEYNTIKDKFTRTCSSYAIEKIERIQNAFLWQSYQVKKRQMDIKNDHKNNERLLFHG
TDADSVPYVNQHGFNRSCAGKNAVSYGKGTYFAVDASYSAKDTYSKPDSNGRKHMYVVRVLTGVFTKGRA
GLVTPPPKNPHNPTDLFDSVTNNTRSPKLFVVFFDNQAYPEYLITFTA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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