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Report for CCDS48010.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48010.2 Public Homo sapiens 9 MEGF9 24 110 108 CCDS HistoryNCBI Gene:1955Re-query CCDS DB by CCDS ID:48010.2Re-query CCDS DB by GeneID:1955See the combined annotation on chromosome 9 in Sequence Viewer

Public Note for CCDS 48010.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript and protein data.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 48010.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373930.4 ENSP00000363040.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373930.4Link to Ensembl Protein Viewer:ENSP00000363040.3Re-query CCDS DB by Nucleotide ID:ENST00000373930Re-query CCDS DB by Protein ID:ENSP00000363040
Original member Current member NCBI NM_001080497.3 NP_001073966.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001080497.3Link to Protein Sequence:NP_001073966.2Re-query CCDS DB by Nucleotide ID:NM_001080497Re-query CCDS DB by Protein ID:NP_001073966Link to BLAST:NP_001073966.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073966.2 602 Q9H1U4 602 100% 0 0

Chromosomal Locations for CCDS 48010.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 120605190 120605641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120607741 120608010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120612396 120612539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120622616 120622755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120659374 120659575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120713758 120714358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1809 nt):
ATGAATGGCGGAGCCGAGCGCGCCATGAGGAGCCTGCCGAGCCTGGGCGGCCTCGCCCTGTTGTGCTGCG
CCGCCGCCGCCGCCGCCGCCGCCGTCGCCTCAGCCGCCTCGGCGGGGAATGTCACCGGTGGCGGCGGGGC
CGCGGGGCAGGTGGACGCGTCGCCGGGCCCCGGGTTGCGGGGCGAGCCCAGCCACCCCTTCCCTAGGGCG
ACGGCTCCCACGGCCCAGGCCCCGAGGACCGGGCCCCCGCGCGCCACCGTCCACCGACCCCTGGCTGCGA
CTTCTCCAGCCCAGTCCCCGGAGACCACCCCTCTTTGGGCGACTGCTGGACCCTCTTCCACCACCTTTCA
GGCGCCGCTCGGCCCCTCGCCGACCACCCCTCCGGCGGCGGAACGCACTTCGACCACCTCTCAGGCGCCG
ACCAGACCCGCGCCGACCACCCTTTCGACGACCACTGGCCCGGCGCCGACCACCCCTGTAGCGACCACCG
TACCGGCGCCCACGACTCCCCGGACCCCGACCCCCGATCTCCCCAGCAGCAGCAACAGCAGCGTCCTCCC
CACCCCACCTGCCACCGAGGCCCCCTCTTCGCCTCCTCCAGAGTATGTATGTAACTGCTCTGTGGTTGGA
AGCCTGAATGTGAATCGCTGCAACCAGACCACAGGGCAGTGTGAGTGTCGGCCAGGTTATCAGGGGCTTC
ACTGTGAAACCTGCAAAGAGGGCTTTTACCTAAATTACACTTCTGGGCTCTGTCAGCCATGTGACTGTAG
TCCACATGGAGCTCTCAGCATACCGTGCAACAGTTCTGGGAAATGCCAGTGCAAAGTGGGTGTCATTGGC
TCTATATGTGACCGATGCCAAGATGGATATTATGGCTTTAGTAAGAATGGCTGCTTGCCCTGCCAATGCA
ATAATCGGTCTGCCAGTTGCGATGCCCTCACAGGTGCTTGTTTAAACTGCCAGGAAAATAGCAAAGGAAA
TCACTGTGAAGAATGTAAAGAAGGATTTTATCAGAGTCCTGATGCCACTAAAGAATGTCTTCGCTGCCCT
TGTTCAGCAGTGACATCTACAGGCAGCTGCTCTATAAAATCGAGTGAATTGGAACCTGAATGTGACCAGT
GTAAAGATGGTTACATAGGCCCGAACTGCAATAAATGTGAAAATGGCTATTACAATTTTGACAGCATCTG
TAGAAAGTGCCAATGTCACGGCCATGTGGACCCAGTTAAAACTCCAAAGATTTGTAAGCCCGAGAGTGGT
GAGTGCATCAACTGCCTCCATAACACCACTGGGTTTTGGTGTGAGAACTGCCTAGAAGGTTATGTTCACG
ACCTCGAGGGAAATTGCATCAAGAAAGAAGTTATTCTTCCAACACCTGAAGGTTCTACCATTTTGGTTTC
CAATGCCTCTTTGACCACATCAGTGCCCACCCCTGTTATAAATAGTACTTTTACCCCTACAACCCTGCAG
ACTATCTTTTCAGTAAGCACTTCTGAAAACAGCACTTCAGCTTTAGCTGATGTATCATGGACCCAATTTA
ACATCATCATTTTGACAGTCATCATCATTGTTGTGGTGCTGCTAATGGGATTTGTGGGGGCTGTATATAT
GTACCGCGAGTACCAAAACCGGAAACTCAATGCCCCCTTTTGGACCATCGAGCTGAAAGAAGACAATATC
AGTTTCAGCAGCTACCATGACAGCATTCCCAATGCAGATGTTTCGGGATTGTTGGAAGATGATGGCAATG
AAGTGGCTCCCAATGGGCAGCTGACCCTGACGACGCCCATACATAACTACAAAGCCTAA

Translation (602 aa):
MNGGAERAMRSLPSLGGLALLCCAAAAAAAAVASAASAGNVTGGGGAAGQVDASPGPGLRGEPSHPFPRA
TAPTAQAPRTGPPRATVHRPLAATSPAQSPETTPLWATAGPSSTTFQAPLGPSPTTPPAAERTSTTSQAP
TRPAPTTLSTTTGPAPTTPVATTVPAPTTPRTPTPDLPSSSNSSVLPTPPATEAPSSPPPEYVCNCSVVG
SLNVNRCNQTTGQCECRPGYQGLHCETCKEGFYLNYTSGLCQPCDCSPHGALSIPCNSSGKCQCKVGVIG
SICDRCQDGYYGFSKNGCLPCQCNNRSASCDALTGACLNCQENSKGNHCEECKEGFYQSPDATKECLRCP
CSAVTSTGSCSIKSSELEPECDQCKDGYIGPNCNKCENGYYNFDSICRKCQCHGHVDPVKTPKICKPESG
ECINCLHNTTGFWCENCLEGYVHDLEGNCIKKEVILPTPEGSTILVSNASLTTSVPTPVINSTFTPTTLQ
TIFSVSTSENSTSALADVSWTQFNIIILTVIIIVVVLLMGFVGAVYMYREYQNRKLNAPFWTIELKEDNI
SFSSYHDSIPNADVSGLLEDDGNEVAPNGQLTLTTPIHNYKA


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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