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Report for CCDS54468.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54468.1 Public Homo sapiens 20 OCSTAMP 24 110 108 CCDS HistoryNCBI Gene:128506Re-query CCDS DB by CCDS ID:54468.1Re-query CCDS DB by GeneID:128506See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54468.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000279028.3 ENSP00000279028.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000279028.3Link to Ensembl Protein Viewer:ENSP00000279028.2Re-query CCDS DB by Nucleotide ID:ENST00000279028Re-query CCDS DB by Protein ID:ENSP00000279028
Original member Current member NCBI NM_080721.3 NP_542452.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_080721.3Link to Protein Sequence:NP_542452.1Re-query CCDS DB by Nucleotide ID:NM_080721Re-query CCDS DB by Protein ID:NP_542452Link to BLAST:NP_542452.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_542452.1 566 Q9BR26 566 100% 0 0

Chromosomal Locations for CCDS 54468.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 46541274 46541927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46545327 46546329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46550517 46550560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1701 nt):
ATGCCAGGCCACCCAGGAGCAGCTGAGCAACTTGTCAAGACCGGGTGGAGGTCCTGGCACTTGGGGTTCT
GGAAGGCCCTTGCCCCACTGCAGGCTGCCTGGGACGCCTTCTCCCAGCCTGTTCCAGCCAGCTGTGGCCA
GCTGCTGACCCAGCTCCTCCTGTGTGCCTCCCTGGCTGCTGCTGCTGCAGGTCTGGTTTATCACTGGCTG
GCATCCTTGCTGCTTTATCCTCCTGGACCTTCAGCCATGGTTGCCACTGTCTGTGGCCTCCTGGTCTTCC
TGAGCCTGGGCCTGGTACCCCCAGTCCGCTGCCTGTTTGCACTCAGCGTGCCCACCCTGGGTATGGAGCA
GGGCCGCCGGCTGCTCCTGTCCTACAGCACTGCCACCCTGGCCATTGCTGTGGTGCCCAACGTCCTGGCC
AACGTGGGTGCGGCCGGGCAGGTGCTGAGGTGTGTCACCGAGGGCTCCCTGGAGAGTCTCCTCAATACCA
CTCACCAGCTGCATGCAGCATCCAGGGCTCTGGGCCCCACAGGCCAGGCAGGCAGCCGGGGCCTGACATT
TGAGGCCCAGGACAATGGCTCTGCCTTCTACCTTCACATGCTCAGGGTCACTCAGCAGGTCCTGGAGGAT
TTCTCTGGCCTGGAGTCCCTGGCCCGGGCAGCAGCGCTAGGGACCCAGCGAGTGGTCACAGGGCTGTTTA
TGTTGGGCCTCCTGGTGGAGTCGGCATGGTACCTCCATTGCTACCTGACAGACCTGCGGTTTGACAATAT
CTACGCCACTCAACAGCTGACCCAGCGGTTGGCACAGGCCCAGGCTACACACCTCCTGGCCCCTCCACCC
ACCTGGCTGCTCCAGGCGGCTCAGCTGAGGCTGTCACAGGAGGAGCTGTTGAGTTGTCTTCTAAGGCTGG
GGCTGCTTGCCCTGCTCCTCGTGGCCACGGCTGTGGCGGTGGCCACAGACCATGTAGCCTTCCTCCTGGC
ACAGGCTACTGTGGACTGGGCTCAGAAGTTGCCAACTGTGCCCATCACGCTCACGGTCAAGTATGATGTG
GCATACACTGTCCTGGGCTTCATCCCTTTCCTCTTCAACCAGCTGGCTCCGGAGAGCCCCTTCCTCTCCG
TCCACAGCTCCTACCAATGGGAGCTCCGCCTCACCTCCGCCCGCTGCCCACTGCTACCCGCCCGGCGTCC
CCGCGCAGCTGCCCCGCTGGCCGCGGGGGCCCTGCAGCTCCTGGCGGGCTCCACGGTGCTCCTGGAGGCC
TACGCCCGCCGCCTGCGGCATGCCATCGCCGCTTCCTTCTTCACAGCCCAGGAGGCGAGGAGGGTCCGCC
ACCTGCACGCCCGGCTCCAGCGAAGACACGACAGGCACCAAGGCCAGCAGCTGCCCCTAGGGGATCCTTC
TTGCGTCCCCACACCCAGACCTGCCTGCAAGCCTCCGGCATGGATAGACTACAGGCTGGATGCCTTAAGA
ACCGAGAGCAGTGAGGGAGAAGGGAAAGAGCTTTGGAGTTGCAGAGACCTGAGTTGTAACCTTGGTCCTG
TGCCGCCTCCCTGTGTGACCTTGGGTAAGTCACTTCACCTCTCTGAGCCTCGGTTTCTACATCTGCATAA
CGACAGCATATTTACCATTGATGTGACCTACTTCCCACGCAGGGATGTGGTCAGGATGGAAGGAAATACT
GGGCATGATAGGCCTGGATAA

Translation (566 aa):
MPGHPGAAEQLVKTGWRSWHLGFWKALAPLQAAWDAFSQPVPASCGQLLTQLLLCASLAAAAAGLVYHWL
ASLLLYPPGPSAMVATVCGLLVFLSLGLVPPVRCLFALSVPTLGMEQGRRLLLSYSTATLAIAVVPNVLA
NVGAAGQVLRCVTEGSLESLLNTTHQLHAASRALGPTGQAGSRGLTFEAQDNGSAFYLHMLRVTQQVLED
FSGLESLARAAALGTQRVVTGLFMLGLLVESAWYLHCYLTDLRFDNIYATQQLTQRLAQAQATHLLAPPP
TWLLQAAQLRLSQEELLSCLLRLGLLALLLVATAVAVATDHVAFLLAQATVDWAQKLPTVPITLTVKYDV
AYTVLGFIPFLFNQLAPESPFLSVHSSYQWELRLTSARCPLLPARRPRAAAPLAAGALQLLAGSTVLLEA
YARRLRHAIAASFFTAQEARRVRHLHARLQRRHDRHQGQQLPLGDPSCVPTPRPACKPPAWIDYRLDALR
TESSEGEGKELWSCRDLSCNLGPVPPPCVTLGKSLHLSEPRFLHLHNDSIFTIDVTYFPRRDVVRMEGNT
GHDRPG


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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