NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS54470.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54470.1 Public Homo sapiens 20 SLC13A3 24 110 108 CCDS HistoryNCBI Gene:64849Re-query CCDS DB by CCDS ID:54470.1Re-query CCDS DB by GeneID:64849See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54470.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000413164.6 ENSP00000415852.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000413164.6Link to Ensembl Protein Viewer:ENSP00000415852.2Re-query CCDS DB by Nucleotide ID:ENST00000413164Re-query CCDS DB by Protein ID:ENSP00000415852
Original member Current member NCBI NM_001193339.2 NP_001180268.1 Accepted alive Link to Nucleotide Sequence:NM_001193339.2Link to Protein Sequence:NP_001180268.1Re-query CCDS DB by Nucleotide ID:NM_001193339Re-query CCDS DB by Protein ID:NP_001180268Link to BLAST:NP_001180268.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001180268.1 552 Q8WWT9-5 552 100% 0 0

Chromosomal Locations for CCDS 54470.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 46560022 46560198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46563414 46563551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46566229 46566390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46575573 46575685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46583572 46583669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46588059 46588163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46589160 46589255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46592404 46592446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46596157 46596342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46610446 46610609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46613460 46613725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46651311 46651421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1659 nt):
ATGGCGGCGCTGGCAGCAGCGGCCAAGAAGGTGTGGAGCGCGCGGCGGCTGCTGGTGCTGCTGTTCACGC
CGCTCGCGCTGCTGCCGGTGGTCTTCGCCCTCCCGCCCAAGGAAGGCCGCTGCTTGTTTGTCATCCTGCT
CATGGCGGTGTACTGGTGCACGGAGGCCCTGCCGCTCTCAGTGACGGCGCTGCTGCCCATCGTCCTCTTC
CCCTTCATGGGCATCTTGCCCTCCAACAAGGTCTGCCCCCAGTACTTCCTCGACACCAACTTCCTCTTCC
TCAGTGGGCTGATCATGGCCAGCGCCATTGAGGAGTGGAACCTGCACCGGCGAATCGCCCTCAAGATCCT
GATGCTTGTTGGAGTCCAGCCGGCCAGGCTCATCCTGGGGATGATGGTGACCACCTCGTTCTTGTCCATG
TGGCTGAGCAACACCGCCTCCACTGCCATGATGCTTCCCATTGCCAATGCCATCCTGAAAAGTCTCTTTG
GCCAGAAGGAGGTTCGAAAGGACCCCAGCCAGGAGAGTGAAGAGAACACAGCAAAGACCACCCTGGGGAG
ACAGAGGTTCCACTGGATCTGCCGGCTGACTCCAGGAAGGAGGATGAATATCGTCGGAACATCTGGAAGG
GCTTCCTCATCTCCATCCCCTACTCAGCCAGTATTGGGGGCACAGCCACACTCACGGGCACAGCCCCTAA
CCTCATCCTGCTTGGCCAGCTCAAGAGGCTGGCTCTGGATCTCCTTCCTGTACGGGGGACTGAGCTTCAG
GGGCTGGAGGAAGAATAAATCTGAGATAAGAACCAATGCAGAAGATAGGGCTCGAGCTGTAATTCGGGAA
GAATACCAGAACCTGGGGCCCATCAAGTTTGCCGAACAGGCTGTTTTCATCCTTTTCTGCATGTTTGCCA
TCCTCCTCTTCACCCGGGACCCGAAGTTCATCCCTGGCTGGGCCAGCCTCTTCAATCCTGGGTTTCTTTC
TGATGCTGTCACCGGCGTGGCTATTGTCACCATCTTGTTCTTCTTCCCGTCCCAAAGGCCCTCTCTCAAG
TGGTGGTTTGACTTCAAAGCTCCCAACACAGAGACAGAGCCCTTGCTGACCTGGAAGAAGGCCCAGGAGA
CAGTGCCCTGGAACATCATCCTTCTCCTGGGAGGGGGCTTCGCCATGGCCAAAGGCTGTGAGGAATCGGG
GCTGTCTGTATGGATTGGTGGGCAGCTGCACCCCCTGGAGAATGTGCCCCCCGCCCTGGCTGTGCTGCTC
ATCACTGTGGTCATCGCCTTCTTCACTGAGTTTGCCAGCAACACGGCGACCATCATCATCTTCCTGCCGG
TCCTGGCAGAGCTGGCCATCCGCCTGAGAGTGCACCCCCTGTATCTGATGATTCCGGGCACAGTCGGCTG
CTCCTTTGCCTTCATGCTCCCGGTCTCAACGCCCCCCAACTCCATCGCCTTCGCCTCTGGACACTTGCTG
GTCAAAGACATGGTGCGGACAGGCCTCCTGATGAACCTGATGGGTGTCCTGCTGCTCAGTTTGGCTATGA
ATACCTGGGCACAGACCATCTTCCAGCTGGGCACCTTCCCGGACTGGGCTGATATGTACTCGGTCAATGT
CACAGCATTGCCACCCACCTTGGCCAATGACACATTTCGGACCCTCTGA

Translation (552 aa):
MAALAAAAKKVWSARRLLVLLFTPLALLPVVFALPPKEGRCLFVILLMAVYWCTEALPLSVTALLPIVLF
PFMGILPSNKVCPQYFLDTNFLFLSGLIMASAIEEWNLHRRIALKILMLVGVQPARLILGMMVTTSFLSM
WLSNTASTAMMLPIANAILKSLFGQKEVRKDPSQESEENTAKTTLGRQRFHWICRLTPGRRMNIVGTSGR
ASSSPSPTQPVLGAQPHSRAQPLTSSCLASSRGWLWISFLYGGLSFRGWRKNKSEIRTNAEDRARAVIRE
EYQNLGPIKFAEQAVFILFCMFAILLFTRDPKFIPGWASLFNPGFLSDAVTGVAIVTILFFFPSQRPSLK
WWFDFKAPNTETEPLLTWKKAQETVPWNIILLLGGGFAMAKGCEESGLSVWIGGQLHPLENVPPALAVLL
ITVVIAFFTEFASNTATIIIFLPVLAELAIRLRVHPLYLMIPGTVGCSFAFMLPVSTPPNSIAFASGHLL
VKDMVRTGLLMNLMGVLLLSLAMNTWAQTIFQLGTFPDWADMYSVNVTALPPTLANDTFRTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH