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Report for CCDS55401.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55401.1 Public Homo sapiens X SRPX 24 110 108 CCDS HistoryNCBI Gene:8406Re-query CCDS DB by CCDS ID:55401.1Re-query CCDS DB by GeneID:8406See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 55401.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000432886.6 ENSP00000411165.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000432886.6Link to Ensembl Protein Viewer:ENSP00000411165.2Re-query CCDS DB by Nucleotide ID:ENST00000432886Re-query CCDS DB by Protein ID:ENSP00000411165
Original member Current member NCBI NM_001170751.2 NP_001164222.1 Accepted alive Link to Nucleotide Sequence:NM_001170751.2Link to Protein Sequence:NP_001164222.1Re-query CCDS DB by Nucleotide ID:NM_001170751Re-query CCDS DB by Protein ID:NP_001164222Link to BLAST:NP_001164222.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164222.1 405 P78539-3 405 100% 0 0

Chromosomal Locations for CCDS 55401.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 38149711 38149894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38154462 38154583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38156896 38157029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38160017 38160196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38160933 38161054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38164769 38164895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38174160 38174351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38178285 38178344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38220696 38220792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1218 nt):
ATGGGGAGCCCCGCACATCGGCCCGCGCTGCTGCTGCTGCTGCCGCCTCTGCTGCTGCTGCTGCTGCTGC
GCGTCCCGCCCAGCCGCAGCTTCCCAGGATCGGGAGACTCACCACTAGAAGACGATGAAGTCGGGTATTC
ACACCCTAGATATAAAGATACCCCGTGGTGCTCCCCCATCAAGGTGAAGTATGGGGATGTGTACTGCAGG
GCCCCTCAAGGAGGATACTACAAAACAGCCCTGGGAACCAGGTGCGACATTCGCTGCCAGAAGGGCTACG
AGCTGCATGGCTCTTCCCTACTGATCTGCCAGTCAAACAAACGATGGTCTGACAAGGTCATCTGCAAACA
TATGGAACCTCCTAGAATCAAGTGCCCAAGTGTGAAGGAACGCATTGCAGAACCCAACAAACTGACAGTC
CGGGTGTCCTGGGAGACACCCGAAGGAAGAGACACAGCAGATGGAATTCTTACTGATGTCATTCTAAAAG
GCCTCCCCCCAGGCTCCAACTTTCCAGAAGGAGACCACAAGATCCAGTACACAGTCTATGACAGAGCTGA
GAATAAGGGCACTTGCAAATTTCGAGTTAAAGTAAGAGTCAAACGCTGTGGCAAACTCAATGCCCCAGAG
AATGGTTACATGAAGTGCTCCAGCGACGGTGATAATTATGGAGCCACCTGTGAGTTCTCCTGCATCGGCG
GCTATGAGCTCCAGGGTAGCCCTGCCCGAGTATGTCAATCCAACCTGGCTTGGTCTGGCACGGAGCCCAC
CTGTGCAGCCATGAACGTCAATGTGGGTGTCAGAACGGCAGCTGCACTTCTGGATCAGTTTTATGAGAAA
AGGAGACTCCTCATTGTGTCCACACCCACAGCCCGAAACCTCCTTTACCGGCTCCAGCTAGGAATGCTGC
AGCAAGCACAGTGTGGCCTTGATCTTCGACACATCACCGTGGTGGAGCTGGTGGGTGTGTTCCCGACTCT
CATTGGCAGGATAGGAGCAAAGATTATGCCTCCAGCCCTAGCGCTGCAGCTCAGGCTGTTGCTGCGAATC
CCACTCTACTCCTTCAGTATGGTGCTAGTGGATAAGCATGGCATGGACAAAGAGCGCTATGTCTCCCTGG
TGATGCCTGTGGCCCTGTTCAACCTGATTGACACTTTTCCCTTGAGAAAAGAAGAGATGGTCCTACAAGC
CGAAATGAGCCAGACCTGTAACACCTGA

Translation (405 aa):
MGSPAHRPALLLLLPPLLLLLLLRVPPSRSFPGSGDSPLEDDEVGYSHPRYKDTPWCSPIKVKYGDVYCR
APQGGYYKTALGTRCDIRCQKGYELHGSSLLICQSNKRWSDKVICKHMEPPRIKCPSVKERIAEPNKLTV
RVSWETPEGRDTADGILTDVILKGLPPGSNFPEGDHKIQYTVYDRAENKGTCKFRVKVRVKRCGKLNAPE
NGYMKCSSDGDNYGATCEFSCIGGYELQGSPARVCQSNLAWSGTEPTCAAMNVNVGVRTAAALLDQFYEK
RRLLIVSTPTARNLLYRLQLGMLQQAQCGLDLRHITVVELVGVFPTLIGRIGAKIMPPALALQLRLLLRI
PLYSFSMVLVDKHGMDKERYVSLVMPVALFNLIDTFPLRKEEMVLQAEMSQTCNT


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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