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Report for CCDS77346.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
77346.1 Public Homo sapiens 19 ZNF480 24 110 108 CCDS HistoryNCBI Gene:147657Re-query CCDS DB by CCDS ID:77346.1Re-query CCDS DB by GeneID:147657See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 77346.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000334564.11 ENSP00000334164.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000334564.11Link to Ensembl Protein Viewer:ENSP00000334164.6Re-query CCDS DB by Nucleotide ID:ENST00000334564Re-query CCDS DB by Protein ID:ENSP00000334164
Original member Current member NCBI NM_001297624.2 NP_001284553.1 Accepted alive Link to Nucleotide Sequence:NM_001297624.2Link to Protein Sequence:NP_001284553.1Re-query CCDS DB by Nucleotide ID:NM_001297624Re-query CCDS DB by Protein ID:NP_001284553Link to BLAST:NP_001284553.1

Chromosomal Locations for CCDS 77346.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 52300413 52300484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 52314153 52314279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 52321579 52322858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1479 nt):
ATGCTGTGTGATGAAAAAGCCCAGAAGAGAAGGAAGAGGAAAGCAAAGGAGTCAGGGATGGCTCTTCCTC
AGGGACACTTAACATTCAGGGACGTGGCCATAGAATTCTCTCAGGCGGAGTGGAAATGCCTGGACCCTGC
ACAGAGGGCTTTATACAAGGATGTGATGTTGGAGAACTACAGGAACCTGGTCTCCCTGGGGAGCAGCTAT
GCATTGGGAAGCAATGCAGAAGACAAACCAATTAAAAAACAACTTGGAGTATCCTTTCACTTACATCTGT
CTGAACTGGAGCTATTTCCAGATGAAAGGGTAATAAATGGATGTAATCAAGTTGAAAACTTTATCAACCA
CAGTTCCTCTGTTTCCTGTCTTCAAGAAATGTCTTCCAGTGTCAAAACCCCCATTTTTAATAGGAATGAT
TTTGATGATTCTTCATTTCTCCCACAAGAACAGAAAGTACACCTTAGAGAAAAACCTTATGAATGTAATG
AGCATAGCAAAGTCTTTAGAGTATCTTCCAGCCTTACTAAACATCAAGTAATCCATACTGTAGAGAAACC
TTACAAATGTAATTCATGCGGCAAGGTCTTTAGTCGCAATTCACACCTTGCAGAACATTGTAGAATTCAT
ACTGGAGAGAAACCTTACAAATGTAATGTCTGTGGCAAGGTTTTTAGTTACAATTCAAACTTTGCACGAC
ATCAAAGAATTCATACCAGAGAGAAGCCGTATGAATGTAATGAATGTGGTAAAGTCTTCAGTAATAATTC
TTACCTTGCACGACATCAAAGAATTCATGCTGAAGAGAAACCTTACAAATGTAATGAATGTGGTAAAGGC
TTCAGTCATAAGTCATCTCTAGCAAATCATTGGAGAATTTATACTGGAGAGAAGCCTTACAAATGTGATG
AATGTGGCAAGGCCTTCTATAGGATTGCGCTCCTTGTACGACATCAGAAAATTCATACTGGAGAGAAACC
TTACAAATGTAATGAATGTGGAAAGGTCTTTATTCAAAATTCGCACCTAGCACAACATTGGAGAATTCAT
ACAGGAGAGAAACCTTACAAATGTAATGAATGTGGAAAAGTATTTAATCAACTTTCAAATCTTGCACGAC
ATCGAAGAATTCATACTGGAGAGAAGCCTTACAAATGTAATGAATGTGGTAAAGCATTTAGTGAGTATTC
AGGCCTTTCAGCCCATCTTGTAATCCACACTGGAGAGAAGCCTTACAAATGTAGTGAATGTGGCAAGGCA
TTCAGACACAAGTTATCACTAACCAATCATCAGAGAATCCATACTGGAGAAAGACCTTACAAATGTAATG
AATGTGGCAAGGTCTTCAATCGAATTGCACACCTTGCACGACATCGGAAAATTCATACTGGAGAGAAACC
TTACAAATGTAATGAGTGTGGCAAGGCCTTTAGTCGCATTTCATACCTAGCACAACATTGGACAATTCAT
ATGGGATAG

Translation (492 aa):
MLCDEKAQKRRKRKAKESGMALPQGHLTFRDVAIEFSQAEWKCLDPAQRALYKDVMLENYRNLVSLGSSY
ALGSNAEDKPIKKQLGVSFHLHLSELELFPDERVINGCNQVENFINHSSSVSCLQEMSSSVKTPIFNRND
FDDSSFLPQEQKVHLREKPYECNEHSKVFRVSSSLTKHQVIHTVEKPYKCNSCGKVFSRNSHLAEHCRIH
TGEKPYKCNVCGKVFSYNSNFARHQRIHTREKPYECNECGKVFSNNSYLARHQRIHAEEKPYKCNECGKG
FSHKSSLANHWRIYTGEKPYKCDECGKAFYRIALLVRHQKIHTGEKPYKCNECGKVFIQNSHLAQHWRIH
TGEKPYKCNECGKVFNQLSNLARHRRIHTGEKPYKCNECGKAFSEYSGLSAHLVIHTGEKPYKCSECGKA
FRHKLSLTNHQRIHTGERPYKCNECGKVFNRIAHLARHRKIHTGEKPYKCNECGKAFSRISYLAQHWTIH
MG


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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