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Report for CCDS7786.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7786.1 Public Homo sapiens 11 TUB 24 110 108 CCDS HistoryNCBI Gene:7275Re-query CCDS DB by CCDS ID:7786.1Re-query CCDS DB by GeneID:7275See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7786.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000305253.8 ENSP00000305426.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000305253.8Link to Ensembl Protein Viewer:ENSP00000305426.4Re-query CCDS DB by Nucleotide ID:ENST00000305253Re-query CCDS DB by Protein ID:ENSP00000305426
Original member Current member NCBI NM_003320.5 NP_003311.2 Accepted alive Link to Nucleotide Sequence:NM_003320.5Link to Protein Sequence:NP_003311.2Re-query CCDS DB by Nucleotide ID:NM_003320Re-query CCDS DB by Protein ID:NP_003311Link to BLAST:NP_003311.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003311.2 561 P50607-2 561 100% 0 0

Chromosomal Locations for CCDS 7786.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 8038874 8039028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 8039645 8039692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 8089610 8089661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 8090069 8090231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 8094046 8094189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 8095498 8095665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 8096685 8096806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 8097228 8097425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 8097714 8097826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 8098758 8098875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 8100503 8100601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 8100826 8100997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 8101486 8101619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1686 nt):
ATGGGGGCCAGGACACCTTTGCCTTCTTTCTGGGTTTCTTTCTTTGCCGAGACAGGGATTTTGTTCCCAG
GAGGCACTCCCTGGCCCATGGGATCTCAGCATTCAAAGCAGCACAGGAAACCTGGGCCCCTGAAACGGGG
CCACCGAAGAGATCGGAGAACAACCAGGAGGAAGTACTGGAAGGAAGGAAGGGAGATCGCTCGTGTCTTA
GATGATGAGGGCAGAAACCTGAGGCAGCAGAAGCTTGATCGGCAGCGGGCCCTGCTGGAGCAGAAGCAGA
AGAAGAAGCGCCAGGAGCCCCTGATGGTGCAGGCCAATGCAGATGGGCGGCCCCGGAGCCGGCGGGCCCG
GCAGTCAGAGGAACAAGCCCCCCTGGTGGAGTCCTACCTCAGCAGCAGTGGCAGCACCAGCTACCAAGTT
CAAGAGGCCGACTCACTCGCCAGTGTGCAGCTGGGAGCCACGCGCCCAACAGCACCAGCTTCAGCCAAGA
GAACCAAGGCGGCAGCTACAGCAGGGGGCCAGGGTGGCGCCGCTAGGAAGGAGAAGAAGGGAAAGCACAA
AGGCACCAGCGGGCCAGCAGCACTGGCAGAAGACAAGTCTGAGGCCCAAGGCCCAGTGCAGATTCTGACT
GTGGGCCAGTCAGACCACGCCCAGGACGCAGGGGAGACGGCAGCTGGTGGGGGCGAACGGCCCAGCGGGC
AGGATCTCCGTGCCACGATGCAGAGGAAGGGCATCTCCAGCAGCATGAGCTTTGACGAGGATGAGGAGGA
TGAGGAGGAGAATAGCTCCAGCTCCTCCCAGCTAAATAGTAACACCCGCCCCAGCTCTGCTACTAGCAGG
AAGTCCGTCAGGGAGGCAGCCTCAGCCCCTAGCCCAACAGCTCCAGAGCAACCAGTGGACGTTGAGGTCC
AGGATCTTGAGGAGTTTGCACTGAGGCCGGCCCCCCAGGGTATCACCATCAAATGCCGCATCACTCGGGA
CAAGAAAGGGATGGACCGGGGCATGTACCCCACCTACTTTCTGCACCTGGACCGTGAGGATGGGAAGAAG
GTGTTCCTCCTGGCGGGAAGGAAGAGAAAGAAGAGTAAAACTTCCAATTACCTCATCTCTGTGGACCCAA
CAGACTTGTCTCGAGGAGGGGACAGCTATATCGGGAAACTGCGGTCCAACTTGATGGGCACCAAGTTCAC
TGTTTATGACAATGGAGTCAACCCTCAGAAGGCCTCATCCTCCACTTTGGAAAGTGGAACCTTACGTCAG
GAGCTGGCAGCTGTGTGCTACGAGACAAACGTCTTAGGCTTCAAGGGGCCTCGGAAGATGAGCGTGATTG
TCCCAGGCATGAACATGGTTCATGAGAGAGTCTCTATCCGCCCCCGCAACGAGCATGAGACACTGCTAGC
ACGCTGGCAGAATAAGAACACGGAGAGTATCATCGAGCTGCAAAACAAGACACCTGTCTGGAATGATGAC
ACACAGTCCTATGTACTCAACTTCCATGGGCGCGTCACACAGGCCTCCGTGAAGAACTTCCAGATCATCC
ATGGCAATGACCCGGACTACATCGTGATGCAGTTTGGCCGGGTAGCAGAGGATGTGTTCACCATGGATTA
CAACTACCCGCTGTGTGCACTGCAGGCCTTTGCCATTGCCCTGTCCAGCTTCGACAGCAAGCTGGCGTGC
GAGTAG

Translation (561 aa):
MGARTPLPSFWVSFFAETGILFPGGTPWPMGSQHSKQHRKPGPLKRGHRRDRRTTRRKYWKEGREIARVL
DDEGRNLRQQKLDRQRALLEQKQKKKRQEPLMVQANADGRPRSRRARQSEEQAPLVESYLSSSGSTSYQV
QEADSLASVQLGATRPTAPASAKRTKAAATAGGQGGAARKEKKGKHKGTSGPAALAEDKSEAQGPVQILT
VGQSDHAQDAGETAAGGGERPSGQDLRATMQRKGISSSMSFDEDEEDEEENSSSSSQLNSNTRPSSATSR
KSVREAASAPSPTAPEQPVDVEVQDLEEFALRPAPQGITIKCRITRDKKGMDRGMYPTYFLHLDREDGKK
VFLLAGRKRKKSKTSNYLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLESGTLRQ
ELAAVCYETNVLGFKGPRKMSVIVPGMNMVHERVSIRPRNEHETLLARWQNKNTESIIELQNKTPVWNDD
TQSYVLNFHGRVTQASVKNFQIIHGNDPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLAC
E


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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