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Report for CCDS78498.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78498.1 Public Homo sapiens X CSTF2 24 110 108 CCDS HistoryNCBI Gene:1478Re-query CCDS DB by CCDS ID:78498.1Re-query CCDS DB by GeneID:1478See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78498.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000415585.7 ENSP00000387996.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000415585.7Link to Ensembl Protein Viewer:ENSP00000387996.2Re-query CCDS DB by Nucleotide ID:ENST00000415585Re-query CCDS DB by Protein ID:ENSP00000387996
Original member Current member NCBI NM_001306206.2 NP_001293135.1 Accepted alive Link to Nucleotide Sequence:NM_001306206.2Link to Protein Sequence:NP_001293135.1Re-query CCDS DB by Nucleotide ID:NM_001306206Re-query CCDS DB by Protein ID:NP_001293135Link to BLAST:NP_001293135.1

Chromosomal Locations for CCDS 78498.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 100820417 100820474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100821527 100821605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100822251 100822420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100823292 100823428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100823886 100824005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100824120 100824257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100826634 100826757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100828040 100828102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100830808 100830867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100831515 100831656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100832734 100832909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100833180 100833472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100837339 100837449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100838239 100838361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1794 nt):
ATGGCGGGTTTGACTGTGAGAGACCCAGCGGTGGATCGTTCTCTACGTTCTGTGTTCGTGGGGAACATTC
CTTATGAAGCTACTGAAGAGCAGTTGAAGGACATCTTTTCTGAGGTTGGACCTGTTGTTAGTTTCAGATT
GGTATACGATAGAGAGACAGGAAAGCCAAAGGGTTATGGCTTCTGTGAATACCAAGACCAAGAGACAGCA
CTTAGTGCCATGCGGAACCTGAATGGGCGCGAATTCAGTGGGAGAGCACTTCGAGTGGACAATGCTGCCA
GTGAAAAGAACAAAGAAGAGCTGAAGAGCCTTGGCACTGGTGCCCCTGTCATTGAGTCACCTTATGGAGA
GACCATCAGTCCTGAGGATGCCCCTGAGTCCATTAGCAAAGCAGTTGCCAGCCTTCCACCAGAGCAGATG
TTTGAGCTGATGAAACAAATGAAGCTCTGTGTCCAGAATAGTCCCCAGGAGGCACGGAACATGTTACTTC
AGAACCCTCAACTGGCTTATGCTTTGCTGCAAGCACAGGTAGTGATGAGAATTGTGGATCCGGAAATTGC
CCTGAAAATTCTGCATCGCCAGACAAATATCCCAACGCTGATTGCAGGCAACCCTCAGCCAGTCCATGGT
GCTGGGCCTGGCTCAGGATCCAATGTGTCAATGAACCAGCAGAATCCTCAGGCCCCTCAGGCCCAGTCTT
TGGGTGGAATGCATGTCAATGGCGCACCTCCTCTGATGCAAGCTTCTATGCAGGGTGGAGTTCCAGCACC
AGGGCAAATGCCAGCTGCTGTCACAGGACCTGGCCCTGGTTCCTTAGCTCCTGGAGGAGGAATGCAGGCT
CAGGTTGGAATGCCAGGAAGTGGACCAGTGTCCATGGAACGGGGGCAAGGAACCCTACAGCACTCGCCCG
TGGGACCCGCCGGGCCTGCATCAATTGAGCGAGTTCAAGTGCCGATGCAAGACCCCAGAGCAGCTATGCA
GCGGGGATCCTTGCCTGCGAATGTCCCAACCCCTCGAGGCTTGTTAGGAGATGCTCCGAATGATCCACGG
GGAGGCACTTTACTTTCTGTAACTGGAGAGGTAGAGCCTAGAGGTTACTTGGGACCACCTCATCAGGGTC
CACCCATGCACCATGTCCCTGGCCATGAGAGCCGAGGACCACCCCCACATGAACTGAGGGGAGGGCCATT
ACCCGAGCCCAGACCTCTAATGGCAGAACCAAGAGGACCCATGCTAGATCAGAGGGGTCCACCCTTGGAT
GGCAGAGGTGGAAGGGATCCCCGAGGAATAGATGCACGAGGGATGGAGGCCCGAGCCATGGAGGCAAGAG
GGTTAGATGCCAGAGGATTAGAGGCCCGTGCAATGGAGGCCCGTGCGATGGAAGCTCGTGCAATGGAGGC
CCGAGCGATGGAGGCCCGTGCAATGGAAGTCCGAGGGATGGAGGCCAGAGGCATGGATACCAGAGGCCCA
GTGCCTGGCCCCAGAGGACCTATACCTAGTGGAATGCAGGGTCCCAGTCCAATTAACATGGGGGCGGTTG
TCCCCCAGGGATCCAGACAGGTCCCAGTCATGCAGGGAACAGGAATGCAAGGAGCAAGTATACAGGGTGG
AAGCCAGCCTGGCGGCTTTAGTCCCGGGCAGAACCAAGTCACTCCACAGGATCATGAGAAGGCTGCTTTG
ATTATGCAGGTTCTACAACTGACTGCAGACCAGATTGCCATGTTGCCTCCTGAGCAAAGGCAGAGTATCC
TGATTTTAAAGGAACAAATACAGAAATCCACTGGAGCACCTTGA

Translation (597 aa):
MAGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETA
LSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPVIESPYGETISPEDAPESISKAVASLPPEQM
FELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVDPEIALKILHRQTNIPTLIAGNPQPVHG
AGPGSGSNVSMNQQNPQAPQAQSLGGMHVNGAPPLMQASMQGGVPAPGQMPAAVTGPGPGSLAPGGGMQA
QVGMPGSGPVSMERGQGTLQHSPVGPAGPASIERVQVPMQDPRAAMQRGSLPANVPTPRGLLGDAPNDPR
GGTLLSVTGEVEPRGYLGPPHQGPPMHHVPGHESRGPPPHELRGGPLPEPRPLMAEPRGPMLDQRGPPLD
GRGGRDPRGIDARGMEARAMEARGLDARGLEARAMEARAMEARAMEARAMEARAMEVRGMEARGMDTRGP
VPGPRGPIPSGMQGPSPINMGAVVPQGSRQVPVMQGTGMQGASIQGGSQPGGFSPGQNQVTPQDHEKAAL
IMQVLQLTADQIAMLPPEQRQSILILKEQIQKSTGAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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