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Report for CCDS8033.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8033.1 Public Homo sapiens 11 TTC9C 24 110 108 CCDS HistoryNCBI Gene:283237Re-query CCDS DB by CCDS ID:8033.1Re-query CCDS DB by GeneID:283237See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8033.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000316461.9 ENSP00000325266.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000316461.9Link to Ensembl Protein Viewer:ENSP00000325266.3Re-query CCDS DB by Nucleotide ID:ENST00000316461Re-query CCDS DB by Protein ID:ENSP00000325266
Original member Current member EBI ENST00000532583.1 ENSP00000434340.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000532583.1Link to Ensembl Protein Viewer:ENSP00000434340.1Re-query CCDS DB by Nucleotide ID:ENST00000532583Re-query CCDS DB by Protein ID:ENSP00000434340
Original member Current member NCBI NM_001318812.2 NP_001305741.1 Accepted alive Link to Nucleotide Sequence:NM_001318812.2Link to Protein Sequence:NP_001305741.1Re-query CCDS DB by Nucleotide ID:NM_001318812Re-query CCDS DB by Protein ID:NP_001305741Link to BLAST:NP_001305741.1
Original member Current member NCBI NM_001318813.2 NP_001305742.1 Accepted alive Link to Nucleotide Sequence:NM_001318813.2Link to Protein Sequence:NP_001305742.1Re-query CCDS DB by Nucleotide ID:NM_001318813Re-query CCDS DB by Protein ID:NP_001305742Link to BLAST:NP_001305742.1
Original member Current member NCBI NM_173810.4 NP_776171.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173810.4Link to Protein Sequence:NP_776171.1Re-query CCDS DB by Nucleotide ID:NM_173810Re-query CCDS DB by Protein ID:NP_776171Link to BLAST:NP_776171.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001305741.1 171 Q8N5M4-1 171 100% 0 0
NP_001305742.1 171 Q8N5M4-1 171 100% 0 0
NP_776171.1 171 Q8N5M4-1 171 100% 0 0

Chromosomal Locations for CCDS 8033.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 62728849 62729086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62735382 62735564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62738288 62738382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (516 nt):
ATGGAGAAGCGTCTGCAGGAGGCTCAGCTGTACAAGGAGGAAGGGAACCAGCGCTACCGGGAAGGGAAGT
ACCGAGATGCTGTGAGTAGGTACCATCGAGCTCTGCTTCAGCTGCGGGGTCTGGATCCGAGTCTGCCCTC
TCCGTTACCTAATCTCGGACCTCAGGGCCCGGCCCTCACGCCTGAACAAGAAAACATATTGCATACCACC
CAGACAGACTGCTATAACAATCTAGCTGCTTGTCTCCTTCAGATGGAGCCCGTGAACTACGAACGAGTGA
GAGAATATAGTCAGAAAGTCCTGGAACGACAGCCTGATAATGCCAAGGCCTTGTATCGGGCCGGAGTGGC
CTTTTTCCATCTGCAGGACTATGACCAGGCCCGCCACTACCTCCTGGCTGCCGTGAATAGGCAGCCTAAA
GATGCCAACGTCCGGCGGTACCTCCAGCTGACACAGTCAGAACTCAGCAGCTACCATAGAAAAGAGAAGC
AGCTCTACCTGGGCATGTTTGGTTAA

Translation (171 aa):
MEKRLQEAQLYKEEGNQRYREGKYRDAVSRYHRALLQLRGLDPSLPSPLPNLGPQGPALTPEQENILHTT
QTDCYNNLAACLLQMEPVNYERVREYSQKVLERQPDNAKALYRAGVAFFHLQDYDQARHYLLAAVNRQPK
DANVRRYLQLTQSELSSYHRKEKQLYLGMFG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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