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Report for CCDS85935.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85935.1 Public Homo sapiens 1 SPATA21 24 110 108 CCDS HistoryNCBI Gene:374955Re-query CCDS DB by CCDS ID:85935.1Re-query CCDS DB by GeneID:374955See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 85935.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000540400.1 ENSP00000440046.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000540400.1Link to Ensembl Protein Viewer:ENSP00000440046.1Re-query CCDS DB by Nucleotide ID:ENST00000540400Re-query CCDS DB by Protein ID:ENSP00000440046
Original member Current member NCBI NM_001353349.1 NP_001340278.1 Accepted alive Link to Nucleotide Sequence:NM_001353349.1Link to Protein Sequence:NP_001340278.1Re-query CCDS DB by Nucleotide ID:NM_001353349Re-query CCDS DB by Protein ID:NP_001340278Link to BLAST:NP_001340278.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001340278.1 446 Q7Z572-2 446 100% 0 0

Chromosomal Locations for CCDS 85935.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 16398765 16398822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16399344 16399521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16400720 16400892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16403727 16403844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16403968 16404039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16404967 16405104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16409118 16409203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16409601 16410043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16410778 16410852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1341 nt):
ATGGCTCAGCCGGGCGCGGTGGAACACGCTTGTCATCCCAGCACTTTGGGAGGCCAAGGCGGAGGATCAC
TTGAGGAGGTGAGGGACATTGGAGAGAGGCGGGAGCCAGACCGTGCGCAGCAGCAGCCTCAGAAGCCCGC
GGTGGCTGCAGGGACACAGAGCCTCGGGAACTTCCGGCAGGGCTTCATGAAGTGCTTGCTGGAGGTGGAG
AAAATGGAGGCCTCCCATCGGAGAGCCTCGAAGGCCCGGTCCCAGACAGCCCAGAAGTCGCCCAGGACCC
TGACCCCGGTGCCCACCTCAGCTCCAAGCCTGCCTCAGACCCCTGCCTCGGTCCCTGCCAGCGGCCCATC
GTGGGCCCGGCTGCCAGCTCCTGGGCCAGAACCTGCCCCCATGGGAGCCCCGGTCCCCACCTCCATGCCT
TGCCCTGTCCTGCTGGGCCCTGCCCTGGACCTGGGCTGGAGAAGGATGGAACTCTTGCACCAGAGCAGCG
AGAGAACCCTGAGCTACGCCAAGGCGCGGCAGGAGCCGGAAGAGCAGAGCCTCCAAAAGCTTTATCAAAA
CCGGGAGAAGTCCGAGGAGCAACTGACCCTGAAGCAAGAGGAAGCCTTCCGCAGCTACTTTGAGATCTTC
AATGGTCCTGGTGAGGTGGATGCACAGAGCCTGAAGAATATCCTGCTCCTAATGGGCTTCTCTGTGACGC
TGGCCCAGGTGGAGGACGCCCTGATGAGTGCTGATGTCAATGGAGATGGTCGTGTGGACTTCAAAGACTT
CTTGGCTGTGATGACAGACACCAGGCGCTTCTTCTGCTCTGTGGAACAGAACGCCCTGTCGGACATGGCT
CCCCACAACCCCCACACTCTACTCTTTGAGATCCTGTCCCTGCTGGTAGAGATGCTGGCCTTACCAGAGG
CAGTCTTAGAGGAAATCACAAACTACTACCAGAAAAAGCTGAAGGAAGGCACCTGCAAGGCCCAGGAGAT
GGAAGCGGCCGTAGGCCGGCTGCGGTTGCAGAAGCTTCCCTACAACCCCCAGCAAGAAGAGAGCTCAGAA
GTTCCAGAACGAAAGGTCCTCAGTATCCTGAGCCGGCTGAAGCAGCAGAACTATGCTCCCAACCTGCAGA
GCCCCTATGCCCAGGTGCCCTGCATCCTGCTCTGCCCACAGCTGGACAAGAAGATGGTCCGTAGGCAGCC
GAGCAACCACTATGCACTAGACCAGTGCACACCCCCTGGCCTGGATCCTGACATCCGCAGCCCCTTCTTC
CAGTCAGGATCTCAAGGAAACAGGGAACACAACTCTGACAGCAGAAAGTGGCTCAGCTCTGTGCCAGCTC
GAACCCACTGA

Translation (446 aa):
MAQPGAVEHACHPSTLGGQGGGSLEEVRDIGERREPDRAQQQPQKPAVAAGTQSLGNFRQGFMKCLLEVE
KMEASHRRASKARSQTAQKSPRTLTPVPTSAPSLPQTPASVPASGPSWARLPAPGPEPAPMGAPVPTSMP
CPVLLGPALDLGWRRMELLHQSSERTLSYAKARQEPEEQSLQKLYQNREKSEEQLTLKQEEAFRSYFEIF
NGPGEVDAQSLKNILLLMGFSVTLAQVEDALMSADVNGDGRVDFKDFLAVMTDTRRFFCSVEQNALSDMA
PHNPHTLLFEILSLLVEMLALPEAVLEEITNYYQKKLKEGTCKAQEMEAAVGRLRLQKLPYNPQQEESSE
VPERKVLSILSRLKQQNYAPNLQSPYAQVPCILLCPQLDKKMVRRQPSNHYALDQCTPPGLDPDIRSPFF
QSGSQGNREHNSDSRKWLSSVPARTH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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