|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
35-567 |
1.08e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.79 E-value: 1.08e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119598971 35 ELQTQLRKAEA----VALKYQQHQESLSAQLQVVYEHRSRLEKSLQKERLEHKKAK--EDFLVYKLEAQETLNKGRQDSN 108
Cdd:COG1196 257 ELEAELAELEAeleeLRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRelEERLEELEEELAELEEELEELE 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119598971 109 SRYSALNVQHQMLKSQHEELKKQHSDLEE---EHRKQGEDFSRTFNDHKQKYLQLQQEKEQELSKLKE---TVYNLREEN 182
Cdd:COG1196 337 EELEELEEELEEAEEELEEAEAELAEAEEallEAEAELAEAEEELEELAEELLEALRAAAELAAQLEEleeAEEALLERL 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119598971 183 RQLRKAHQDIHTQLQDVKQQHKNLLSEHEQLVVTLEDHKSALAAAQTQVAEYKQLKDTLNRIPSLRKPDPAEQQNVTQVA 262
Cdd:COG1196 417 ERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLL 496
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119598971 263 HSPQGYNTAREKPTREVQEVSRNNDVWQNHEAVPGRAEDTKLYAPTHKEAEFQAPPEPIQQEVERREPEEHQVEEEHRKA 342
Cdd:COG1196 497 LEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATF 576
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119598971 343 LEEEEMEQ----VGQAEHLEEEHDPSPEEQDREWKEQHEQREAANLLEGHARAEVYPSAkpmIKFQSPYEEQLEQQRLAV 418
Cdd:COG1196 577 LPLDKIRAraalAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAA---LRRAVTLAGRLREVTLEG 653
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119598971 419 QQVEEAQQLREHQEALHQQRLQGHLLRQQEQQQQQVAREMALQRQAELEEGRPQHQEQLRQQAHYDAMDNDIVQGAEDQG 498
Cdd:COG1196 654 EGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAE 733
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 119598971 499 IQGEEGAYERDNQHQDEAEGDPGNRHEPREQGPREADpESEADRAAVEDINPAddpnnqGEDEFEEAEQ 567
Cdd:COG1196 734 REELLEELLEEEELLEEEALEELPEPPDLEELERELE-RLEREIEALGPVNLL------AIEEYEELEE 795
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
344-596 |
1.84e-07 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 54.62 E-value: 1.84e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119598971 344 EEEEMEQVGQAEHLEEEHDPSPEEQDREWKEQHEQ-------REAANLLEGHARAEVYPSAKPMIKFQSPYEEQLEQQRL 416
Cdd:TIGR00927 647 EEGERPTEAEGENGEESGGEAEQEGETETKGENESegeipaeRKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGT 726
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119598971 417 AVQQVEEAQQLREHQEALHQQRLQGhllrqqeqqqqqvarEMALQRQAELEEGRPQHQEQLRQQAHYDAMDNDIVQGAED 496
Cdd:TIGR00927 727 EDEGEIETGEEGEEVEDEGEGEAEG---------------KHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEM 791
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119598971 497 QGIQGEEGAYERDNQHQDEAEGDPGNRHEPREQGPREADPESEADRAAVEDINPADDP---NNQGEDEFEEAEQVREENL 573
Cdd:TIGR00927 792 KGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEkgvDGGGGSDGGDSEEEEEEEE 871
|
250 260
....*....|....*....|...
gi 119598971 574 PDENEEQKQSNQKQENTEVEEHL 596
Cdd:TIGR00927 872 EEEEEEEEEEEEEEEEEENEEPL 894
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
455-654 |
3.31e-06 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 50.76 E-value: 3.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119598971 455 AREMALQRQAELEEGRPQHQEQLRQQAHYDAMDndiVQGAEDQGIQGEEGAYERDNQHQDEAEGDpgnRHEPREQGPREA 534
Cdd:TIGR00927 699 IEAKEADHKGETEAEEVEHEGETEAEGTEDEGE---IETGEEGEEVEDEGEGEAEGKHEVETEGD---RKETEHEGETEA 772
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119598971 535 DPESEADRAAVEDINPADDPNNQGEDEFEEAEQVREENLPDENEEQKQSNQKQENTEVEEHLVMAGNPDQQEDNVDEQYQ 614
Cdd:TIGR00927 773 EGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGV 852
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 119598971 615 EEAEEEVQEDLTEEKKRELEHNAEETYGENDENTDDKNND 654
Cdd:TIGR00927 853 DGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEE 892
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
35-592 |
1.43e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.60 E-value: 1.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119598971 35 ELQTQLRKAEAVALKYQQHQESLSAQLQVVYEHRSRLEKSLQKERLEHKKAKEdfLVYKLEAQETLNKGRQDSNSRYSAl 114
Cdd:PTZ00121 1370 EKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADE--AKKKAEEKKKADEAKKKAEEAKKA- 1446
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119598971 115 nvqhqmlksqhEELKKQhsdlEEEHRKQGEDFSRTFNDHKQKYLQLQQEKEQELSKLKETVYNLREENRQLRKAHQDIHT 194
Cdd:PTZ00121 1447 -----------DEAKKK----AEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKK 1511
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119598971 195 QLQDVKQQHKNLLSEheqlvvtLEDHKSALAAAQTQVAEYKQLKDTLNRIPSLRKPDPAEQQNVTQVAHSPQGYNTAREK 274
Cdd:PTZ00121 1512 ADEAKKAEEAKKADE-------AKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAE 1584
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119598971 275 PTREVQEVSRNNDVWQNHEAVPGRAEDTKLYAPTHKEAEFQAPPEPIQQEVERREPEEHQVEEEHRKALEEEEMEQVGQA 354
Cdd:PTZ00121 1585 EAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAA 1664
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119598971 355 E--HLEEEHDPSPEEQDREWKEQHEQREAANLLEGHARA--EVYPSAKPMIKFQSPYEEQLEQQRLAVQQVE-EAQQLRE 429
Cdd:PTZ00121 1665 EeaKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKaeELKKKEAEEKKKAEELKKAEEENKIKAEEAKkEAEEDKK 1744
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119598971 430 HQEALHQQRLQGHLLRQQEQQQQQVAREMALQRQAELEEGRPQHQEQLRQQAHY---DAMDN--DIVQGAEDQGIQGEEG 504
Cdd:PTZ00121 1745 KAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKkikDIFDNfaNIIEGGKEGNLVINDS 1824
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119598971 505 AYERDNQHQDEAEGDPGNRHEPR--EQGPREADPESEADRAAVEDINPADDPNNQGEDEFEEAEQVREENLPDENEEQKQ 582
Cdd:PTZ00121 1825 KEMEDSAIKEVADSKNMQLEEADafEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADEIEKIDKDDIEREIPN 1904
|
570
....*....|
gi 119598971 583 SNQKQENTEV 592
Cdd:PTZ00121 1905 NNMAGKNNDI 1914
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
34-236 |
1.82e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.13 E-value: 1.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119598971 34 YELQTQLRKAEAVALKYQQHQESLSAQLQVVYEHRSRLEKSLQK--ERLEHKKAKEDFLVYKLEAQETlnkgrqdsnsRY 111
Cdd:TIGR02168 277 SELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEEleAQLEELESKLDELAEELAELEE----------KL 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119598971 112 SALNVQHQMLKSQHEELKKQHSDLE---EEHRKQGEDFSRTFNDHKQKYLQLQ---QEKEQELSKLKETVYNLREENRQL 185
Cdd:TIGR02168 347 EELKEELESLEAELEELEAELEELEsrlEELEEQLETLRSKVAQLELQIASLNneiERLEARLERLEDRRERLQQEIEEL 426
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 119598971 186 RKAHQ-----DIHTQLQDVKQQHKNLLSEHEQLVVTLEDHKSALAAAQTQVAEYKQ 236
Cdd:TIGR02168 427 LKKLEeaelkELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAER 482
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
121-655 |
1.27e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.52 E-value: 1.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119598971 121 LKSQHEELKKQHSDLEE--EHRKQGEDFSRTFNDHKQKYLQLQQEK----EQELSKLKETVYNLREENRQLRKAhqdiht 194
Cdd:PTZ00121 1320 AKKKAEEAKKKADAAKKkaEEAKKAAEAAKAEAEAAADEAEAAEEKaeaaEKKKEEAKKKADAAKKKAEEKKKA------ 1393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119598971 195 qlQDVKQQHKNLLSEHEQLVVTLEDHKSAlAAAQTQVAEYKQLKDTLNRIPSLRKPDPAEQQnVTQVAHSPQGYNTAREK 274
Cdd:PTZ00121 1394 --DEAKKKAEEDKKKADELKKAAAAKKKA-DEAKKKAEEKKKADEAKKKAEEAKKADEAKKK-AEEAKKAEEAKKKAEEA 1469
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119598971 275 ptREVQEVSRNNDVWQNHEAVPGRAEDTKLYA-PTHKEAEFQAPPEPIQQEVERREPEEHQVEEEHRKALEEEEMEQVGQ 353
Cdd:PTZ00121 1470 --KKADEAKKKAEEAKKADEAKKKAEEAKKKAdEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKK 1547
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119598971 354 AEHLEEEHDPSPEEQDREWKEQHEQREAANLLEGHA----RAEVYPSAKPMIKFQSPYEEQLEQQRLAVQQVEEAQQLRE 429
Cdd:PTZ00121 1548 ADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAeeakKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKK 1627
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119598971 430 HQEalhqqrlqghllrqqeqqqqqVAREMALQRQAELEEGRpqHQEQLRQQahydamdndivqgAEDQGIQGEEgayERD 509
Cdd:PTZ00121 1628 AEE---------------------EKKKVEQLKKKEAEEKK--KAEELKKA-------------EEENKIKAAE---EAK 1668
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119598971 510 NQHQDEAEGDPGNRHEPREQGPREADPESEADRAAVEDINPADDPNNQGEDEFEEAEQVRE---ENLPDENEEQKQSNQK 586
Cdd:PTZ00121 1669 KAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKikaEEAKKEAEEDKKKAEE 1748
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 119598971 587 QENTEVEEHLVMAGNPDQQEDNVDEQYQEEAEEEVQEDLTEEKKRELEHNAEETYGENDENTDDKNNDG 655
Cdd:PTZ00121 1749 AKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEG 1817
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
32-238 |
1.37e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.39 E-value: 1.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119598971 32 LYYELQTQLRKAEAvalkyQQHQESLSAQLQVVyehRSRLEKSlqKERLEHKKAKEDFLVYKLEAQETLNKgRQDSNSRY 111
Cdd:COG3206 160 AYLEQNLELRREEA-----RKALEFLEEQLPEL---RKELEEA--EAALEEFRQKNGLVDLSEEAKLLLQQ-LSELESQL 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119598971 112 SALNVQHQMLKSQHEELKKQHSDLEEEHRKQGEDfsRTFNDHKQKYLQLQQEKEQELSKLKE---TVYNLREENRQLRKA 188
Cdd:COG3206 229 AEARAELAEAEARLAALRAQLGSGPDALPELLQS--PVIQQLRAQLAELEAELAELSARYTPnhpDVIALRAQIAALRAQ 306
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 119598971 189 -HQDIHTQLQDVKQQHKNLLSEHEQLVVTLEDHKSALAAAQTQVAEYKQLK 238
Cdd:COG3206 307 lQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLE 357
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
454-660 |
1.32e-03 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 42.29 E-value: 1.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119598971 454 VAREMALQRQAELEEGRPQHQEqlrqqahyDAMDNDIVQGAEDQGIQGEEGAYERDNQHQDEAEGDpgNRHEPREQGPRE 533
Cdd:TIGR00927 621 VAKVMALGDLSKGDVAEAEHTG--------ERTGEEGERPTEAEGENGEESGGEAEQEGETETKGE--NESEGEIPAERK 690
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119598971 534 ADPESEADRAAVEdinpADDPNNQGEDEFEEAEQVREENLPDENEEQKQSNQKQENTEVEEHLVMAGNPDQQEDNVDEQY 613
Cdd:TIGR00927 691 GEQEGEGEIEAKE----ADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEH 766
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 119598971 614 QEEaeeevqedlTEEKKRELEHNAEETYGENDENtddKNNDGEEQEV 660
Cdd:TIGR00927 767 EGE---------TEAEGKEDEDEGEIQAGEDGEM---KGDEGAEGKV 801
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
63-468 |
2.16e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.46 E-value: 2.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119598971 63 VVYEHRSRLEkSLQKERlehKKAKEdFLVYKLEAQETLNKGRQdsnSRYSALNVQHQMLKSQHEELKKQHSDLEEEHRKQ 142
Cdd:COG1196 194 ILGELERQLE-PLERQA---EKAER-YRELKEELKELEAELLL---LKLRELEAELEELEAELEELEAELEELEAELAEL 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119598971 143 gedfsrtfndhKQKYLQLQQEKEQELSKLKETVYNLREENRQLRKAHQDIHTQLQDVKQQHKNLLSEHEQLVVTLEDHKS 222
Cdd:COG1196 266 -----------EAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEE 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119598971 223 ALAAAQTQVAEYKQLKDTLNripslrkpdpAEQQNVTQVAhspqgyntarekptREVQEVSRNNDVWQNHEAvpgrAEDT 302
Cdd:COG1196 335 LEEELEELEEELEEAEEELE----------EAEAELAEAE--------------EALLEAEAELAEAEEELE----ELAE 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119598971 303 KLYAPTHKEAEFQAPpepiQQEVERREPEEHQVEEEHRKALEEEEMEQVGQAEHLEEEHDpsPEEQDREWKEQHEQREAA 382
Cdd:COG1196 387 ELLEALRAAAELAAQ----LEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEE--ALEEAAEEEAELEEEEEA 460
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119598971 383 NLLEGHARAEVYPSAkpmikfqspyEEQLEQQRLAVQQVEEAQQLREHQEALHQQRLQGHLLRQQEQQQQQVAREMALQR 462
Cdd:COG1196 461 LLELLAELLEEAALL----------EAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLI 530
|
....*.
gi 119598971 463 QAELEE 468
Cdd:COG1196 531 GVEAAY 536
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
35-667 |
2.63e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 41.28 E-value: 2.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119598971 35 ELQTQLRKAEAVALKYQQHQESLSAQLQVVYEHRSRLEkslQKERLEHKKAKEDFLVYKLEAQETLNKGRQDSNSRYSAL 114
Cdd:PTZ00121 1358 EAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADE---AKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKAD 1434
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119598971 115 NVQHQML-KSQHEELKKQhsdlEEEHRKQGEDFSRTFNDHKQKYLQLQQEKEQELSKLKETVYNLREENRQLRKAHQDIH 193
Cdd:PTZ00121 1435 EAKKKAEeAKKADEAKKK----AEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKK 1510
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119598971 194 TQLQDVKQQHKNLLSEheqlvvtLEDHKSALAAAQTQVAEYKQLKDTLNRIPSLRKPDPAEQQNVTQVAHSPQGYNTARE 273
Cdd:PTZ00121 1511 KADEAKKAEEAKKADE-------AKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKA 1583
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119598971 274 KPTREVQEVSRNNDVWQNHEAVPGRAEDTKlyapthKEAEFQAPPEPIQQEVERREPEEHQveeehrKALEEEEMEQVGQ 353
Cdd:PTZ00121 1584 EEAKKAEEARIEEVMKLYEEEKKMKAEEAK------KAEEAKIKAEELKKAEEEKKKVEQL------KKKEAEEKKKAEE 1651
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119598971 354 AEHLEEEHDPSPEEQDRewKEQHEQREAANLlegharaevypsakpmikfQSPYEEQLEQQRLAVQQVEEAQQLREHQEA 433
Cdd:PTZ00121 1652 LKKAEEENKIKAAEEAK--KAEEDKKKAEEA-------------------KKAEEDEKKAAEALKKEAEEAKKAEELKKK 1710
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119598971 434 LHQQRLQGHLLRQQEQQQQQVAREmaLQRQAELEEgrpQHQEQLRQQahyDAMDNDIVQGAEDQGIQGEEGAYERDNQHQ 513
Cdd:PTZ00121 1711 EAEEKKKAEELKKAEEENKIKAEE--AKKEAEEDK---KKAEEAKKD---EEEKKKIAHLKKEEEKKAEEIRKEKEAVIE 1782
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119598971 514 DEAEGDPGNRHEPREQGPREADPESEADRAAVEDINPADDPNNQGEDEfEEAEQVREENLpdeneeqkqsnQKQENTEVE 593
Cdd:PTZ00121 1783 EELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDS-AIKEVADSKNM-----------QLEEADAFE 1850
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 119598971 594 EHLVMAGNPDQQEDNVDEQYqeeaeeevqedlteEKKRELEHNAEETYGENDENTDDKNNDGEEQEVRDDNRPK 667
Cdd:PTZ00121 1851 KHKFNKNNENGEDGNKEADF--------------NKEKDLKEDDEEEIEEADEIEKIDKDDIEREIPNNNMAGK 1910
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
35-257 |
6.70e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.04 E-value: 6.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119598971 35 ELQTQLRKAEAVALKYQQHQESLSAQLQVVYEHRSRLEKSLQKERLEHKKAKEDFLVYKLEAQEtLNKGRQDSNSRYSAL 114
Cdd:TIGR02168 751 QLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTL-LNEEAANLRERLESL 829
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119598971 115 NVQHQMLKSQHEELKKQHSDLEEE------HRKQGEDFSRTFNDHKQKYLQLQQEKEQELSKLKETVYNLREENRQLRKa 188
Cdd:TIGR02168 830 ERRIAATERRLEDLEEQIEELSEDieslaaEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELES- 908
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119598971 189 hqdihtQLQDVKQQHKNLLSEHEQLVVTLEDHKSALAAAQTQVAE-YKQLKDTLNRIPSLRKPDPAEQQN 257
Cdd:TIGR02168 909 ------KRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEeYSLTLEEAEALENKIEDDEEEARR 972
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
45-243 |
6.86e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.36 E-value: 6.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119598971 45 AVALKYQQHQESLSAQLQVVYEHRSRLEKSLQKERLEHKKAKEDflVYKLEAQ-ETLNKGRQDSNSRYSALNVQHQMLKS 123
Cdd:COG4942 13 LAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQ--LAALERRiAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119598971 124 QHEELKKQHSDLEEEHRKQ------------------GEDFSRT---------FNDHKQKYLQLQQEKEQELSKLKETVY 176
Cdd:COG4942 91 EIAELRAELEAQKEELAELlralyrlgrqpplalllsPEDFLDAvrrlqylkyLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 119598971 177 NLREENRQLRKAHQDIHTQLQDVKQQHKNLLSEHEQlvvTLEDHKSALAAAQTQVAEYKQLKDTLNR 243
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLLARLEK---ELAELAAELAELQQEAEELEALIARLEA 234
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
73-246 |
8.58e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 39.23 E-value: 8.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119598971 73 KSLQKERLEHKKAKEDFLVYKLEAQETLNKgrqdSNSRYSALNVQHQMLKSQHEELKKQHSDLEEEHRKQGEDFSR--TF 150
Cdd:TIGR04523 127 NKLEKQKKENKKNIDKFLTEIKKKEKELEK----LNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKleLL 202
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119598971 151 NDHKQKYLQLQQEKEQELSKLKETVYNLREENRQLRKAHQDIHTQLQDVKQQHKNLLSEHEQLVVTLEDHKSALAAAQTQ 230
Cdd:TIGR04523 203 LSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKK 282
|
170
....*....|....*.
gi 119598971 231 VaeyKQLKDTLNRIPS 246
Cdd:TIGR04523 283 I---KELEKQLNQLKS 295
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
32-676 |
8.83e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 39.53 E-value: 8.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119598971 32 LYYELQTQLRKAE---AVALKYQQHQESLsaqlqvvyEHRSRLEKSLQKERLEHKKAKEDflvyklEAQETLNKGRQDSN 108
Cdd:COG1196 194 ILGELERQLEPLErqaEKAERYRELKEEL--------KELEAELLLLKLRELEAELEELE------AELEELEAELEELE 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119598971 109 SRYSALNVQHQMLKSQHEELKKQHSDLEEEHRKQGEDFSRTFNDhkqkyLQLQQEKEQELSKLKETvynLREENRQLRKA 188
Cdd:COG1196 260 AELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQD-----IARLEERRRELEERLEE---LEEELAELEEE 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119598971 189 HQDIHTQLQDVKQQHKNLLSEHEQLVVTLEDHKSALAAAQTQVAEYKQLKDTLNRipslrkpdpAEQQNVTQVAHSPQGY 268
Cdd:COG1196 332 LEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAE---------ELLEALRAAAELAAQL 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119598971 269 NTAREKPTREVQEVSRNNDVWQNHEAVPGRAEDTKlyapthkEAEFQAppepiQQEVERREPEEHQVEEEHRKALEEEEM 348
Cdd:COG1196 403 EELEEAEEALLERLERLEEELEELEEALAELEEEE-------EEEEEA-----LEEAAEEEAELEEEEEALLELLAELLE 470
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119598971 349 EQVGQAEHLEEEHDPSPEEQDREWKEQHEQREAANLLEGHARAEvypsakpmikfqspyeeQLEQQRLAVQQVEEAQQLR 428
Cdd:COG1196 471 EAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAAL-----------------LLAGLRGLAGAVAVLIGVE 533
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119598971 429 EHQEALHQQRLQGHLLRQQEQQQQQVAREMALQRQ-----AELEEGRPQHQEQLRQQAHYDAMDNDIVQGAEDQGIQGEE 503
Cdd:COG1196 534 AAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAakagrATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADA 613
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119598971 504 GAYERDNQHQDEAEGDpgNRHEPREQGPREADPESEADRAAVEDINPADDPNNQGEDEFEEAEQVREENLPDENEEQKQS 583
Cdd:COG1196 614 RYYVLGDTLLGRTLVA--ARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEE 691
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119598971 584 NQKQENTEVEEhlvmagnpdqqEDNVDEQYQEEAEEEVQEDLTEEKKRELEHNAEETYGENDENTDDKNNDGEEQEVRDD 663
Cdd:COG1196 692 ELELEEALLAE-----------EEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPP 760
|
650
....*....|...
gi 119598971 664 NRpkgreehyeeE 676
Cdd:COG1196 761 DL----------E 763
|
|
| |
