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Conserved domains on  [gi|2462530241|ref|XP_054227194|]
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protein O-mannosyl-transferase TMTC2 isoform X2 [Homo sapiens]

Protein Classification

DUF1736 and TPR domain-containing protein( domain architecture ID 12091460)

DUF1736 and TPR domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TMTC_DUF1736 pfam08409
Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in ...
 247-318 2.29e-36

Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in O-mannosyl -transferases TMTC1-4, and constitutes a loop between TM7 and TM8 located in the ER lumen that contains a small hydrophobic, but not membrane-embedded helix. This loop is critical for catalysis and binding of ligands, especially the lipid-linked sugar moiety. TMTCs transfers mannosyl residues to the hydroxyl group of serine or threonine residues. The 4 members of the TMTC family are O-mannosyl-transferases acting primarily on the cadherin superfamily; each member has distinct roles in decorating the cadherin domains with O-linked mannose glycans at specific regions. These proteins also act as O-mannosyl-transferase on other proteins such as PDIA3.


:

Pssm-ID: 462468  Cd Length: 75  Bit Score: 130.73  E-value: 2.29e-36
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462530241 247 GNKPPSFSNSDNPAADSDSLLTRTLTFFYLPTKNLWLLLCPDTLSFDWSMDAVPLLKTVCDWRNLHTVAFYT 318
Cdd:pfam08409   1 GGQLPVFSASDNPAAFSPSLLTRTLTYNYLPALNAWLLLFPSWLCFDWSMGSIPLIESLSDPRNLATLAFYG 72
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
488-689 2.25e-30

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 120.11  E-value: 2.25e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 488 IKVNP--AKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAIGSRPTLASAYL 565
Cdd:COG0457     1 LELDPddAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 566 NTGIILMNQGRTEEARRTFLKCSEIpdeNLKDPHAHkssvtsclYNLGKLYHEQGHYEEALSVYKEAIQKMPRQfapQSL 645
Cdd:COG0457    81 NLGLALQALGRYEEALEDYDKALEL---DPDDAEAL--------YNLGLALLELGRYDEAIEAYERALELDPDD---ADA 146

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 2462530241 646 YNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLAL 689
Cdd:COG0457   147 LYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALAL 190
 
Name Accession Description Interval E-value
TMTC_DUF1736 pfam08409
Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in ...
 247-318 2.29e-36

Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in O-mannosyl -transferases TMTC1-4, and constitutes a loop between TM7 and TM8 located in the ER lumen that contains a small hydrophobic, but not membrane-embedded helix. This loop is critical for catalysis and binding of ligands, especially the lipid-linked sugar moiety. TMTCs transfers mannosyl residues to the hydroxyl group of serine or threonine residues. The 4 members of the TMTC family are O-mannosyl-transferases acting primarily on the cadherin superfamily; each member has distinct roles in decorating the cadherin domains with O-linked mannose glycans at specific regions. These proteins also act as O-mannosyl-transferase on other proteins such as PDIA3.


Pssm-ID: 462468  Cd Length: 75  Bit Score: 130.73  E-value: 2.29e-36
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462530241 247 GNKPPSFSNSDNPAADSDSLLTRTLTFFYLPTKNLWLLLCPDTLSFDWSMDAVPLLKTVCDWRNLHTVAFYT 318
Cdd:pfam08409   1 GGQLPVFSASDNPAAFSPSLLTRTLTYNYLPALNAWLLLFPSWLCFDWSMGSIPLIESLSDPRNLATLAFYG 72
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
488-689 2.25e-30

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 120.11  E-value: 2.25e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 488 IKVNP--AKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAIGSRPTLASAYL 565
Cdd:COG0457     1 LELDPddAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 566 NTGIILMNQGRTEEARRTFLKCSEIpdeNLKDPHAHkssvtsclYNLGKLYHEQGHYEEALSVYKEAIQKMPRQfapQSL 645
Cdd:COG0457    81 NLGLALQALGRYEEALEDYDKALEL---DPDDAEAL--------YNLGLALLELGRYDEAIEAYERALELDPDD---ADA 146

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 2462530241 646 YNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLAL 689
Cdd:COG0457   147 LYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALAL 190
TPR_12 pfam13424
Tetratricopeptide repeat;
560-634 3.51e-10

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 56.63  E-value: 3.51e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462530241 560 LASAYLNTGIILMNQGRTEEARRTFLKCSEIpDENLKDPHAHKSSVTscLYNLGKLYHEQGHYEEALSVYKEAIQ 634
Cdd:pfam13424   2 VATALNNLAAVLRRLGRYDEALELLEKALEI-ARRLLGPDHPLTATT--LLNLGRLYLELGRYEEALELLERALA 73
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 510-675 2.31e-08

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 54.29  E-value: 2.31e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 510 SEAESAYrnaLYYRSNMAdmlynlgllLQENSRFAEALHYYK--LAIGSRPTLASAYL-NTGIILMNQGRTEEARRTFLK 586
Cdd:PRK02603   30 KKAKEAF---VYYRDGMS---------AQADGEYAEALENYEeaLKLEEDPNDRSYILyNMGIIYASNGEHDKALEYYHQ 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 587 CSEipdENLKDPhahkssvtSCLYNLGKLYHEQG--------------HYEEALSVYKEAIQKMPRQFApqslynmmgea 652
Cdd:PRK02603   98 ALE---LNPKQP--------SALNNIAVIYHKRGekaeeagdqdeaeaLFDKAAEYWKQAIRLAPNNYI----------- 155

                         170       180
                  ....*....|....*....|...
gi 2462530241 653 ymrlsklpEAEHWYMESLRSKTD 675
Cdd:PRK02603  156 --------EAQNWLKTTGRSNID 170
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 492-687 1.12e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 55.47  E-value: 1.12e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 492 PAKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAIGSRPTLASAYLNTGIIL 571
Cdd:TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLL 679

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 572 MNQGRTEEARRTFlkcSEIPDENLKDPHAHKSsvtsclynLGKLYHEQGHYEEALSVYKEAIQKmprqfAPQSLYNM-MG 650
Cdd:TIGR02917 680 LAAKRTESAKKIA---KSLQKQHPKAALGFEL--------EGDLYLRQKDYPAAIQAYRKALKR-----APSSQNAIkLH 743

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 2462530241 651 EAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLL 687
Cdd:TIGR02917 744 RALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELY 780
Mgr3-like cd24145
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; ...
 477-635 5.36e-06

Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; Mgr3 (also called mitochondrial genome-required protein 3) is a component of the mitochondrial inner membrane i-AAA protease supercomplex, which degrades misfolded mitochondrial proteins. The supercomplex is composed of Mgr1, Mgr3, and Yme1. Mgr3, together with Mgr1, functions in an adapter complex that targets substrates to the i-AAA protease for degradation.


Pssm-ID: 467945 [Multi-domain]  Cd Length: 307  Bit Score: 48.88  E-value: 5.36e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 477 WQNEEMLYRSGIKVNPaKAWG----NLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLG-LLLQENSRFAEALHYYK 551
Cdd:cd24145   128 KAVEILLKLGELWMSP-SEVGafleELATAYDLYGRFCLALPLYMQALSLKGQILLSQANCHsLVLMNNEAAELALHALR 206

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 552 LAIGSRPTLASAYLNTGiilmNQGRTEEARRTF---LKCSEIPDENLKDPHAHKSSVTScLYNLGKLYHEQGHYEEALSV 628
Cdd:cd24145   207 KPLSSTLIEASRLPQKS----RDQLLEAALKWAqkaLDVAKSIKPKDRDPECDQACALA-LYNLGVIAEMLGNLDEARKL 281


                  ....*..
gi 2462530241 629 YKEAIQK 635
Cdd:cd24145   282 YKEAISL 288
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 608-637 1.68e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 39.35  E-value: 1.68e-04
                           10        20        30
                   ....*....|....*....|....*....|
gi 2462530241  608 CLYNLGKLYHEQGHYEEALSVYKEAIQKMP 637
Cdd:smart00028   3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32
 
Name Accession Description Interval E-value
TMTC_DUF1736 pfam08409
Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in ...
 247-318 2.29e-36

Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in O-mannosyl -transferases TMTC1-4, and constitutes a loop between TM7 and TM8 located in the ER lumen that contains a small hydrophobic, but not membrane-embedded helix. This loop is critical for catalysis and binding of ligands, especially the lipid-linked sugar moiety. TMTCs transfers mannosyl residues to the hydroxyl group of serine or threonine residues. The 4 members of the TMTC family are O-mannosyl-transferases acting primarily on the cadherin superfamily; each member has distinct roles in decorating the cadherin domains with O-linked mannose glycans at specific regions. These proteins also act as O-mannosyl-transferase on other proteins such as PDIA3.


Pssm-ID: 462468  Cd Length: 75  Bit Score: 130.73  E-value: 2.29e-36
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462530241 247 GNKPPSFSNSDNPAADSDSLLTRTLTFFYLPTKNLWLLLCPDTLSFDWSMDAVPLLKTVCDWRNLHTVAFYT 318
Cdd:pfam08409   1 GGQLPVFSASDNPAAFSPSLLTRTLTYNYLPALNAWLLLFPSWLCFDWSMGSIPLIESLSDPRNLATLAFYG 72
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
488-689 2.25e-30

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 120.11  E-value: 2.25e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 488 IKVNP--AKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAIGSRPTLASAYL 565
Cdd:COG0457     1 LELDPddAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 566 NTGIILMNQGRTEEARRTFLKCSEIpdeNLKDPHAHkssvtsclYNLGKLYHEQGHYEEALSVYKEAIQKMPRQfapQSL 645
Cdd:COG0457    81 NLGLALQALGRYEEALEDYDKALEL---DPDDAEAL--------YNLGLALLELGRYDEAIEAYERALELDPDD---ADA 146

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 2462530241 646 YNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLAL 689
Cdd:COG0457   147 LYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALAL 190
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
473-634 1.56e-26

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 108.94  E-value: 1.56e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 473 RNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYY 550
Cdd:COG0457    20 RLGRYEEAIEDYEKALELDPddAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDY 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 551 KLAIGSRPTLASAYLNTGIILMNQGRTEEARRTFLKCSEIpdeNLKDPHAHkssvtsclYNLGKLYHEQGHYEEALSVYK 630
Cdd:COG0457   100 DKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALEL---DPDDADAL--------YNLGIALEKLGRYEEALELLE 168


                  ....
gi 2462530241 631 EAIQ 634
Cdd:COG0457   169 KLEA 172
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 473-688 5.23e-25

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 105.20  E-value: 5.23e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 473 RNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYY 550
Cdd:COG2956    54 RRGEYDRAIRIHQKLLERDPdrAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVL 133

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 551 KLAIGSRPTLASAYLNTGIILMNQGRTEEARRTFLKCSEIpdenlkDPHAHKSsvtscLYNLGKLYHEQGHYEEALSVYK 630
Cdd:COG2956   134 ERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKL------DPDCARA-----LLLLAELYLEQGDYEEAIAALE 202

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2462530241 631 EAIQKMPRQFapqSLYNMMGEAYMRLSKLPEAEHWYMESLRSKTDhIPAHLTYGKLLA 688
Cdd:COG2956   203 RALEQDPDYL---PALPRLAELYEKLGDPEEALELLRKALELDPS-DDLLLALADLLE 256
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 472-671 1.02e-22

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 98.65  E-value: 1.02e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 472 IRNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHY 549
Cdd:COG2956    87 LKAGLLDRAEELLEKLLELDPddAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEA 166

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 550 YKLAIGSRPTLASAYLNTGIILMNQGRTEEARRTFLKCSEIpdenlkDPHAhkssvTSCLYNLGKLYHEQGHYEEALSVY 629
Cdd:COG2956   167 LEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQ------DPDY-----LPALPRLAELYEKLGDPEEALELL 235

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 2462530241 630 KEAIQKMPRqfapQSLYNMMGEAYMRLSKLPEAEHWYMESLR 671
Cdd:COG2956   236 RKALELDPS----DDLLLALADLLERKEGLEAALALLERQLR 273
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 473-596 1.05e-22

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 103.15  E-value: 1.05e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 473 RNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYY 550
Cdd:COG3914    90 ALGRYEEALALYRRALALNPdnAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAAL 169

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 2462530241 551 KLAIGSRPTLASAYLNTGIILMNQGRTEEARRTFLKCSEIPDENLK 596
Cdd:COG3914   170 RRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNAD 215
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 499-646 8.56e-22

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 100.45  E-value: 8.56e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 499 LGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAIGSRPTLASAYLNTGIILMNQGRTE 578
Cdd:COG3914    84 AALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLE 163

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462530241 579 EARRTFLKCSEI-PDenlkDPHAHkssvtsclYNLGKLYHEQGHYEEALSVYKEAIQKMPRQFAPQSLY 646
Cdd:COG3914   164 EAIAALRRALELdPD----NAEAL--------NNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 524-676 2.60e-19

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 84.86  E-value: 2.60e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 524 SNMADMLYNLGLLLQENSRFAEALHYYKLAIGSRPTLASAYLNTGIILMNQGRTEEARRTFLKCSEI-PDEnlkdPHAHk 602
Cdd:COG4783     1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELdPDE----PEAR- 75

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462530241 603 ssvtsclYNLGKLYHEQGHYEEALSVYKEAIQKMPRQfaPQSLYNmMGEAYMRLSKLPEAEHWYMESLRSKTDH 676
Cdd:COG4783    76 -------LNLGLALLKAGDYDEALALLEKALKLDPEH--PEAYLR-LARAYRALGRPDEAIAALEKALELDPDD 139
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 512-695 3.15e-18

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 88.90  E-value: 3.15e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 512 AESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAIGSRPTLASAYLNTGIILMNQGRTEEARRTFLKCSEIP 591
Cdd:COG3914    63 AAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALN 142

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 592 DENlkdPHAHkssvtsclYNLGKLYHEQGHYEEALSVYKEAIQKMPRQFApqsLYNMMGEAYMRLSKLPEAEHWYMESLR 671
Cdd:COG3914   143 PDF---AEAY--------LNLGEALRRLGRLEEAIAALRRALELDPDNAE---ALNNLGNALQDLGRLEEAIAAYRRALE 208

                         170       180
                  ....*....|....*....|....
gi 2462530241 672 SKTDHIPAHLTYgkLLALTVSFFW 695
Cdd:COG3914   209 LDPDNADAHSNL--LFALRQACDW 230
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 493-639 1.95e-17

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 79.47  E-value: 1.95e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 493 AKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAIGSRPTLASAYLNTGIILM 572
Cdd:COG4783     4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462530241 573 NQGRTEEARRTFLKCSEIpdeNLKDPHAHkssvtsclYNLGKLYHEQGHYEEALSVYKEAIQKMPRQ 639
Cdd:COG4783    84 KAGDYDEALALLEKALKL---DPEHPEAY--------LRLARAYRALGRPDEAIAALEKALELDPDD 139
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 511-652 7.71e-16

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 74.66  E-value: 7.71e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 511 EAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAIGSRPTLASAYLNTGIILMNQGRTEEARRTFLKCSEI 590
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462530241 591 -PDenlkDPHAhkssvtscLYNLGKLYHEQGHYEEALSVYKEAIQKMPRQFAPQSLYNMMGEA 652
Cdd:COG4235    81 dPD----NPEA--------LYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASIAEA 131
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
493-634 2.45e-15

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 75.72  E-value: 2.45e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 493 AKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAIGSRPTLASAYLNTGIILM 572
Cdd:COG4785    73 AQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALY 152

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462530241 573 NQGRTEEARRTFLKCSEIPDEN------------LKDPHAHKSSVTSclyNLGKLYHEQGHYEEALSVYKEAIQ 634
Cdd:COG4785   153 YLGRYELAIADLEKALELDPNDperalwlylaerKLDPEKALALLLE---DWATAYLLQGDTEEARELFKLALA 223
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 469-594 5.40e-15

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 72.53  E-value: 5.40e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 469 KTAIRNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEA 546
Cdd:COG4783    12 QALLLAGDYDEAEALLEKALELDPdnPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEA 91

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 2462530241 547 LHYYKLAIGSRPTLASAYLNTGIILMNQGRTEEARRTFLKCSEIPDEN 594
Cdd:COG4783    92 LALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 561-688 9.02e-15

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 71.76  E-value: 9.02e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 561 ASAYLNTGIILMNQGRTEEARRTFLKCSEIPDENlkdPHAhkssvtscLYNLGKLYHEQGHYEEALSVYKEAIQKMPRQF 640
Cdd:COG4783     4 AEALYALAQALLLAGDYDEAEALLEKALELDPDN---PEA--------FALLGEILLQLGDLDEAIVLLHEALELDPDEP 72

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 2462530241 641 ApqsLYNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLA 688
Cdd:COG4783    73 E---ARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYR 117
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 511-688 1.56e-14

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 77.34  E-value: 1.56e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 511 EAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAIGSRPTLASAYLNTGIILMNQGRTEEARRTFLKCSEI 590
Cdd:COG3914    28 LAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALAL 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 591 pdenlkDPHAHKSsvtscLYNLGKLYHEQGHYEEALSVYKEAIQKMPRQFApqsLYNMMGEAYMRLSKLPEAEHWYMESL 670
Cdd:COG3914   108 ------NPDNAEA-----LFNLGNLLLALGRLEEALAALRRALALNPDFAE---AYLNLGEALRRLGRLEEAIAALRRAL 173

                         170
                  ....*....|....*...
gi 2462530241 671 RSKTDHIPAHLTYGKLLA 688
Cdd:COG3914   174 ELDPDNAEALNNLGNALQ 191
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 470-582 2.67e-14

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 76.57  E-value: 2.67e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 470 TAIRNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEAL 547
Cdd:COG3914   121 LLLALGRLEEALAALRRALALNPdfAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAI 200

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2462530241 548 HYYKLAIGSRPTLASAYLNTGIILMNQGRTEEARR 582
Cdd:COG3914   201 AAYRRALELDPDNADAHSNLLFALRQACDWEVYDR 235
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 457-586 7.38e-14

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 69.60  E-value: 7.38e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 457 YATATLIVFYGLKTAIRNGDWQNEEMLYRSGIKVNPAKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLL 536
Cdd:COG5010    18 TKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALL 97

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 2462530241 537 LQENSRFAEALHYYKLAIGSRPTLASAYLNTGIILMNQGRTEEARRTFLK 586
Cdd:COG5010    98 YSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQR 147
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 511-639 7.38e-14

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 69.60  E-value: 7.38e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 511 EAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAIGSRPTLASAYLNTGIILMNQGRTEEARRTFLKCSEI 590
Cdd:COG5010    38 KEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALAL 117

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 2462530241 591 PDENlkdPHAHkssvtsclYNLGKLYHEQGHYEEALSVYKEAIQKMPRQ 639
Cdd:COG5010   118 SPDN---PNAY--------SNLAALLLSLGQDDEAKAALQRALGTSPLK 155
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 512-672 2.82e-13

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 68.06  E-value: 2.82e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 512 AESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAIGSRPTLASAYLNTGIILMNQGRTEEARRTFLKCSEIp 591
Cdd:COG5010     5 EGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL- 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 592 deNLKDPHAHkssvtsclYNLGKLYHEQGHYEEALSVYKEAIQKMPRQfaPQSLYNmMGEAYMRLSKLPEAEHWYMESLR 671
Cdd:COG5010    84 --DPNNPELY--------YNLALLYSRSGDKDEAKEYYEKALALSPDN--PNAYSN-LAALLLSLGQDDEAKAALQRALG 150


                  .
gi 2462530241 672 S 672
Cdd:COG5010   151 T 151
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 484-594 3.87e-13

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 66.95  E-value: 3.87e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 484 YRSGIKVNP--AKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAIGSRPTLA 561
Cdd:COG4235     6 LRQALAANPndAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNP 85

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2462530241 562 SAYLNTGIILMNQGRTEEARRTFLKCSEIPDEN 594
Cdd:COG4235    86 EALYLLGLAAFQQGDYAEAIAAWQKLLALLPAD 118
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
536-638 5.32e-13

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 65.19  E-value: 5.32e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 536 LLQENSRFAEALHYYKLAIGSRPTLASAYLNTGIILMNQGRTEEARRtFLKCSEIpdeNLKDPHAhkssvtscLYNLGKL 615
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKL---DPNNAEA--------LLNLAEL 68

                          90       100
                  ....*....|....*....|...
gi 2462530241 616 YHEQGHYEEALSVYKEAIQKMPR 638
Cdd:COG3063    69 LLELGDYDEALAYLERALELDPS 91
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
502-596 3.16e-12

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 62.88  E-value: 3.16e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 502 VLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKlAIGSRPTLASAYLNTGIILMNQGRTEEAR 581
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEK-ALKLDPNNAEALLNLAELLLELGDYDEAL 79

                          90
                  ....*....|....*
gi 2462530241 582 RTFLKCSEIPDENLK 596
Cdd:COG3063    80 AYLERALELDPSALR 94
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
515-666 5.20e-12

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 66.09  E-value: 5.20e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 515 AYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAIgSRPTLASAYLNTGIILMNQGRTEEARRTFLKCSEI-PDe 593
Cdd:COG4785    28 ALLFAAVLALAIALADLALALAAAALAAAALAAERIDRAL-ALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELdPD- 105

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462530241 594 nlkDPHAHkssvtsclYNLGKLYHEQGHYEEALSVYKEAIQKMPRQfaPQSLYNmMGEAYMRLSKLPEAEHWY 666
Cdd:COG4785   106 ---LAEAY--------NNRGLAYLLLGDYDAALEDFDRALELDPDY--AYAYLN-RGIALYYLGRYELAIADL 164
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 560-690 1.14e-11

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 65.91  E-value: 1.14e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 560 LASAYLNTGIILMNQGRTEEARRTFLKCSEIPDENLKdphAHkssvtsclYNLGKLYHEQGHYEEALSVYKEAIQKMPRQ 639
Cdd:COG2956     7 AALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVE---AH--------LALGNLYRRRGEYDRAIRIHQKLLERDPDR 75

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2462530241 640 FApqsLYNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALT 690
Cdd:COG2956    76 AE---ALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQE 123
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
570-671 1.10e-10

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 58.64  E-value: 1.10e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 570 ILMNQGRTEEARRTFLKCSEIpdeNLKDPHAHkssvtsclYNLGKLYHEQGHYEEALSvYKEAIQKMPRQfaPQSLYNMm 649
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALEL---DPDNADAL--------NNLGLLLLEQGRYDEAIA-LEKALKLDPNN--AEALLNL- 65

                          90       100
                  ....*....|....*....|..
gi 2462530241 650 GEAYMRLSKLPEAEHWYMESLR 671
Cdd:COG3063    66 AELLLELGDYDEALAYLERALE 87
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
471-560 1.15e-10

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 58.64  E-value: 1.15e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 471 AIRNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKSQSKISEAEsAYRNALYYRSNMADMLYNLGLLLQENSRFAEALH 548
Cdd:COG3063     2 YLKLGDLEEAEEYYEKALELDPdnADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80

                          90
                  ....*....|..
gi 2462530241 549 YYKLAIGSRPTL 560
Cdd:COG3063    81 YLERALELDPSA 92
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 439-558 3.22e-10

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 59.20  E-value: 3.22e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 439 ARALYVKVQKRFLKSLIFYATATLIVFYGLKTAIRNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKSQSKISEAESAY 516
Cdd:COG5010    32 AGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPnnPELYYNLALLYSRSGDKDEAKEYY 111

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 2462530241 517 RNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAIGSRP 558
Cdd:COG5010   112 EKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
TPR_12 pfam13424
Tetratricopeptide repeat;
560-634 3.51e-10

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 56.63  E-value: 3.51e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462530241 560 LASAYLNTGIILMNQGRTEEARRTFLKCSEIpDENLKDPHAHKSSVTscLYNLGKLYHEQGHYEEALSVYKEAIQ 634
Cdd:pfam13424   2 VATALNNLAAVLRRLGRYDEALELLEKALEI-ARRLLGPDHPLTATT--LLNLGRLYLELGRYEEALELLERALA 73
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 539-637 2.07e-09

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 55.38  E-value: 2.07e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 539 ENSRFAEALHYYKLAIGSRPT---LASAYLNTGIILMNQGRTEEARRTFLKCSEIPDENLKDPHAhkssvtscLYNLGKL 615
Cdd:COG1729     5 KAGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDA--------LLKLGLS 76

                          90       100
                  ....*....|....*....|..
gi 2462530241 616 YHEQGHYEEALSVYKEAIQKMP 637
Cdd:COG1729    77 YLELGDYDKARATLEELIKKYP 98
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 609-688 4.90e-09

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 55.01  E-value: 4.90e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 609 LYNLGKLYHEQGHYEEALSVYKEAIQKMPRQfapQSLYNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLA 688
Cdd:COG4235    20 WLLLGRAYLRLGRYDEALAAYEKALRLDPDN---ADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAF 96
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 615-689 6.19e-09

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 55.35  E-value: 6.19e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462530241 615 LYHEQGHYEEALSVYKEAIQKMPRQFApqsLYNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLAL 689
Cdd:COG5010    63 LYNKLGDFEESLALLEQALQLDPNNPE---LYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLS 134
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
512-637 6.31e-09

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 56.85  E-value: 6.31e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 512 AESAYRNALYYRsNMADMLYNLGLLLQENSRFAEALHYYKLAIGSRPTLASAYLNTGIILMNQGRTEEARRTFLKCSEI- 590
Cdd:COG4785    59 AAERIDRALALP-DLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELd 137

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 2462530241 591 PDenlkDPHAHkssvtsclYNLGKLYHEQGHYEEALSVYKEAIQKMP 637
Cdd:COG4785   138 PD----YAYAY--------LNRGIALYYLGRYELAIADLEKALELDP 172
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
475-582 1.41e-08

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 56.17  E-value: 1.41e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 475 GDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKL 552
Cdd:COG0457    90 GRYEEALEDYDKALELDPddAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEK 169

                          90       100       110
                  ....*....|....*....|....*....|
gi 2462530241 553 AIGSRPTLASAYLNTGIILMNQGRTEEARR 582
Cdd:COG0457   170 LEAAALAALLAAALGEAALALAAAEVLLAL 199
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 510-675 2.31e-08

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 54.29  E-value: 2.31e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 510 SEAESAYrnaLYYRSNMAdmlynlgllLQENSRFAEALHYYK--LAIGSRPTLASAYL-NTGIILMNQGRTEEARRTFLK 586
Cdd:PRK02603   30 KKAKEAF---VYYRDGMS---------AQADGEYAEALENYEeaLKLEEDPNDRSYILyNMGIIYASNGEHDKALEYYHQ 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 587 CSEipdENLKDPhahkssvtSCLYNLGKLYHEQG--------------HYEEALSVYKEAIQKMPRQFApqslynmmgea 652
Cdd:PRK02603   98 ALE---LNPKQP--------SALNNIAVIYHKRGekaeeagdqdeaeaLFDKAAEYWKQAIRLAPNNYI----------- 155

                         170       180
                  ....*....|....*....|...
gi 2462530241 653 ymrlsklpEAEHWYMESLRSKTD 675
Cdd:PRK02603  156 --------EAQNWLKTTGRSNID 170
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 492-687 1.12e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 55.47  E-value: 1.12e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 492 PAKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAIGSRPTLASAYLNTGIIL 571
Cdd:TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLL 679

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 572 MNQGRTEEARRTFlkcSEIPDENLKDPHAHKSsvtsclynLGKLYHEQGHYEEALSVYKEAIQKmprqfAPQSLYNM-MG 650
Cdd:TIGR02917 680 LAAKRTESAKKIA---KSLQKQHPKAALGFEL--------EGDLYLRQKDYPAAIQAYRKALKR-----APSSQNAIkLH 743

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 2462530241 651 EAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLL 687
Cdd:TIGR02917 744 RALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELY 780
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 506-584 3.25e-07

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 49.22  E-value: 3.25e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 506 QSKISEAESAYRNAL--YYRSNMA-DMLYNLGLLLQENSRFAEALHYYKLAIGSRPT---LASAYLNTGIILMNQGRTEE 579
Cdd:COG1729     6 AGDYDEAIAAFKAFLkrYPNSPLApDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLELGDYDK 85


                  ....*
gi 2462530241 580 ARRTF 584
Cdd:COG1729    86 ARATL 90
TPR_12 pfam13424
Tetratricopeptide repeat;
526-590 3.30e-07

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 48.15  E-value: 3.30e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462530241 526 MADMLYNLGLLLQENSRFAEALHYYKLAI--------GSRPTLASAYLNTGIILMNQGRTEEARRTFLKCSEI 590
Cdd:pfam13424   2 VATALNNLAAVLRRLGRYDEALELLEKALeiarrllgPDHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
531-681 5.85e-07

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 51.07  E-value: 5.85e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 531 YNLGLLLQENSRFAEALHYYKLAIGSRPTLASAYLNTGIILMNQGRTEEARR--TFLKCSEIPDENLKDPHAhkssvTSC 608
Cdd:COG4785     1 LYALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAAlaAAALAAERIDRALALPDL-----AQL 75

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462530241 609 LYNLGKLYHEQGHYEEALSVYKEAIQKMPRQfaPQsLYNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHL 681
Cdd:COG4785    76 YYERGVAYDSLGDYDLAIADFDQALELDPDL--AE-AYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYL 145
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
615-688 1.28e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 47.09  E-value: 1.28e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462530241 615 LYHEQGHYEEALSVYKEAIQKMPRQFApqsLYNMMGEAYMRLSKLPEAEHwYMESLRSKTDHIPAHLTYGKLLA 688
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNAD---ALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLL 70
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 533-679 1.34e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 52.01  E-value: 1.34e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 533 LGLLLQENSRFAEALHYYKLAIGSRPTLASAYLNTGIILMNQGRTEEARRTFLKCSEIPDENlkdPHAHKSSVTSclynl 612
Cdd:TIGR02917 369 LGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPEL---GRADLLLILS----- 440

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462530241 613 gklYHEQGHYEEALSVYKEAIQKMPRQfapQSLYNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPA 679
Cdd:TIGR02917 441 ---YLRSGQFDKALAAAKKLEKKQPDN---ASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPA 501
COG3899 COG3899
Predicted ATPase [General function prediction only];
510-634 1.46e-06

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 51.78  E-value: 1.46e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241  510 SEAESAYRNALYYRsnMADMLYNLGLLLQENSRFAEALH------YYKLAIGSRPTLASAYLNTGIILMnqGRTEEARRT 583
Cdd:COG3899    737 PDPEEEYRLALLLE--LAEALYLAGRFEEAEALLERALAaralaaLAALRHGNPPASARAYANLGLLLL--GDYEEAYEF 812

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|.
gi 2462530241  584 FLKCSEIPDEnlkdpHAHKSSVTSCLYNLGKLYHEQGHYEEALSVYKEAIQ 634
Cdd:COG3899    813 GELALALAER-----LGDRRLEARALFNLGFILHWLGPLREALELLREALE 858
TPR_12 pfam13424
Tetratricopeptide repeat;
609-671 3.89e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 45.07  E-value: 3.89e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462530241 609 LYNLGKLYHEQGHYEEALSVYKEAIQKMPRQFAPQSL-----YNMMGEAYMRLSKLPEAEHWYMESLR 671
Cdd:pfam13424   6 LNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPltattLLNLGRLYLELGRYEEALELLERALA 73
Mgr3-like cd24145
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; ...
 477-635 5.36e-06

Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; Mgr3 (also called mitochondrial genome-required protein 3) is a component of the mitochondrial inner membrane i-AAA protease supercomplex, which degrades misfolded mitochondrial proteins. The supercomplex is composed of Mgr1, Mgr3, and Yme1. Mgr3, together with Mgr1, functions in an adapter complex that targets substrates to the i-AAA protease for degradation.


Pssm-ID: 467945 [Multi-domain]  Cd Length: 307  Bit Score: 48.88  E-value: 5.36e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 477 WQNEEMLYRSGIKVNPaKAWG----NLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLG-LLLQENSRFAEALHYYK 551
Cdd:cd24145   128 KAVEILLKLGELWMSP-SEVGafleELATAYDLYGRFCLALPLYMQALSLKGQILLSQANCHsLVLMNNEAAELALHALR 206

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 552 LAIGSRPTLASAYLNTGiilmNQGRTEEARRTF---LKCSEIPDENLKDPHAHKSSVTScLYNLGKLYHEQGHYEEALSV 628
Cdd:cd24145   207 KPLSSTLIEASRLPQKS----RDQLLEAALKWAqkaLDVAKSIKPKDRDPECDQACALA-LYNLGVIAEMLGNLDEARKL 281


                  ....*..
gi 2462530241 629 YKEAIQK 635
Cdd:cd24145   282 YKEAISL 288
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 614-688 8.99e-06

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 45.37  E-value: 8.99e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462530241 614 KLYHEQGHYEEALSVYKEAIQKMPR-QFAPQSLYnMMGEAYMRLSKLPEAEHWYMESLRSKTDHIP---AHLTYGKLLA 688
Cdd:COG1729     1 KALLKAGDYDEAIAAFKAFLKRYPNsPLAPDALY-WLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYL 78
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 609-638 1.20e-05

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 42.51  E-value: 1.20e-05
                          10        20        30
                  ....*....|....*....|....*....|
gi 2462530241 609 LYNLGKLYHEQGHYEEALSVYKEAIQKMPR 638
Cdd:pfam07719   4 LYNLGLAYYKLGDYEEALEAYEKALELDPN 33
TPR_12 pfam13424
Tetratricopeptide repeat;
493-554 2.38e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 42.76  E-value: 2.38e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 493 AKAWGNLGNVLKSQSKISEAESAYRNALY--------YRSNMADMLYNLGLLLQENSRFAEALHYYKLAI 554
Cdd:pfam13424   3 ATALNNLAAVLRRLGRYDEALELLEKALEiarrllgpDHPLTATTLLNLGRLYLELGRYEEALELLERAL 72
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 530-639 3.88e-05

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 46.08  E-value: 3.88e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 530 LYNLGLLLQENSRFAEALHYYKLAIGSRPTLASAYLNTGIILMNQGRTEEARRTFLKCSEIpdenlkDPHAhksSVTSCL 609
Cdd:cd24142     3 LLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIEL------DPDG---GYEKYL 73

                          90       100       110
                  ....*....|....*....|....*....|
gi 2462530241 610 YnLGKLyhEQGhyEEALSVYKEAIQKMPRQ 639
Cdd:cd24142    74 Y-LGQL--SGG--EEALQYYEKGIEILEEE 98
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 469-674 5.37e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 46.62  E-value: 5.37e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 469 KTAIRNGDWQNEEMLYR-------SGIKVNP--AKAWGNLGnvlKSQSKISEAESAYRNAlyyRSNMADMLYNLGLLLQE 539
Cdd:TIGR02917  64 KIYLALGDYAAAEKELRkalslgyPKNQVLPllARAYLLQG---KFQQVLDELPGKTLLD---DEGAAELLALRGLAYLG 137

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 540 NSRFAEALHYYKLAIGSRPTLASAYLNTGIILMNQGRTEEARrtflkcsEIPDENLK-DPHAHKSsvtscLYNLGKLYHE 618
Cdd:TIGR02917 138 LGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEAR-------ALIDEVLTaDPGNVDA-----LLLKGDLLLS 205

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2462530241 619 QGHYEEALSVYKEAIQKMPRqfAPQSLYNmMGEAYMRLSKLPEAEHwYMESLRSKT 674
Cdd:TIGR02917 206 LGNIELALAAYRKAIALRPN--NIAVLLA-LATILIEAGEFEEAEK-HADALLKKA 257
ycf3 CHL00033
photosystem I assembly protein Ycf3
 505-589 6.17e-05

photosystem I assembly protein Ycf3


Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 44.23  E-value: 6.17e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 505 SQSKISEAESAYRNALYYRSNMAD---MLYNLGLLLQENSRFAEALHYYKLAIGSRPTLASAYLNTGII-------LMNQ 574
Cdd:CHL00033   47 SEGEYAEALQNYYEAMRLEIDPYDrsyILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVIchyrgeqAIEQ 126

                          90
                  ....*....|....*
gi 2462530241 575 GRTEEARRTFLKCSE 589
Cdd:CHL00033  127 GDSEIAEAWFDQAAE 141
TPR_11 pfam13414
TPR repeat;
613-656 6.33e-05

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 40.53  E-value: 6.33e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 2462530241 613 GKLYHEQGHYEEALSVYKEAIQKMPRQfaPQSLYNmMGEAYMRL 656
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDN--PEAYYN-LGLAYYKL 41
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 469-554 7.74e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 42.67  E-value: 7.74e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 469 KTAIRNGDWQNEEMLYRSGIKVNP-----AKAWGNLGNVLKSQSKISEAESAYRNALYYRSN---MADMLYNLGLLLQEN 540
Cdd:COG1729     1 KALLKAGDYDEAIAAFKAFLKRYPnsplaPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLEL 80

                          90
                  ....*....|....
gi 2462530241 541 SRFAEALHYYKLAI 554
Cdd:COG1729    81 GDYDKARATLEELI 94
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 531-586 8.39e-05

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 41.17  E-value: 8.39e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2462530241 531 YNLGLLLQENSRFAEALHYYKLAIGSRPTL---ASAYLNTGIILMNQGRTEEARRTFLK 586
Cdd:pfam13432   1 LALARAALRAGDYDDAAAALEAALARFPESpdaAAALLLLGLAALRQGRLAEAAAAYRA 59
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 473-625 1.02e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 45.84  E-value: 1.02e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 473 RNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRfAEALHYY 550
Cdd:TIGR02917 748 ASGNTAEAVKTLEAWLKTHPndAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYA 826

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462530241 551 KLAIGSRPTLAsAYLNT-GIILMNQGRTEEARRTFLKCSEIPDENLkdphahkssvtSCLYNLGKLYHEQGHYEEA 625
Cdd:TIGR02917 827 ERALKLAPNIP-AILDTlGWLLVEKGEADRALPLLRKAVNIAPEAA-----------AIRYHLALALLATGRKAEA 890
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
481-680 1.13e-04

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 44.49  E-value: 1.13e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 481 EMLYRSGIKVNPAKAWGNLGNVLKSQSKISEAESAYRNA--LYYRSNMADmlynlglLLQENSRFAEALHYYKLAI-GSR 557
Cdd:COG4700    48 EVLPELRNSRDARRVQRAARNALDPGRELRELEKALEFAdtVQNRVRLAD-------ALLELGRYDEAIELYEEALtGIF 120

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 558 PTlaSAYLNTGII--LMNQGRTEEARRTFlkcseipDENLKDPHAHKSSVTSCLYnlGKLYHEQGHYEEALSVYKEAIQK 635
Cdd:COG4700   121 AD--DPHILLGLAqaLFELGRYAEALETL-------EKLIAKNPDFKSSDAHLLY--ARALEALGDLEAAEAELEALARR 189

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 2462530241 636 MPrQFAPQSLYnmmGEAYMRLSKLPEAEHWYmESLRSKTDHIPAH 680
Cdd:COG4700   190 YS-GPEARYRY---AKFLARQGRTAEAKELL-EEILDEAKHMPKH 229
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 608-637 1.68e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 39.35  E-value: 1.68e-04
                           10        20        30
                   ....*....|....*....|....*....|
gi 2462530241  608 CLYNLGKLYHEQGHYEEALSVYKEAIQKMP 637
Cdd:smart00028   3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32
COG3899 COG3899
Predicted ATPase [General function prediction only];
543-689 2.51e-04

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 44.46  E-value: 2.51e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241  543 FAEALHYYKLAI------GSRPTLASAYLNTGIILMNQGRTEEARRTFLKC--SEIPDENLKDPHAHKSSVTSCLYNLGK 614
Cdd:COG3899    721 YAEALRYLERALellppdPEEEYRLALLLELAEALYLAGRFEEAEALLERAlaARALAALAALRHGNPPASARAYANLGL 800

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462530241  615 LYHeqGHYEEALSVYKEAIQKMPRQFAPQSL---YNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLAL 689
Cdd:COG3899    801 LLL--GDYEEAYEFGELALALAERLGDRRLEaraLFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALAAA 876
TPR_1 pfam00515
Tetratricopeptide repeat;
609-634 2.59e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 38.56  E-value: 2.59e-04
                          10        20
                  ....*....|....*....|....*.
gi 2462530241 609 LYNLGKLYHEQGHYEEALSVYKEAIQ 634
Cdd:pfam00515   4 LYNLGNAYFKLGKYDEALEYYEKALE 29
TPR_7 pfam13176
Tetratricopeptide repeat;
608-634 2.76e-04

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 38.68  E-value: 2.76e-04
                          10        20
                  ....*....|....*....|....*..
gi 2462530241 608 CLYNLGKLYHEQGHYEEALSVYKEAIQ 634
Cdd:pfam13176   1 ALLNLGRIYRKLGDYDEAISLYEQALA 27
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 492-663 2.94e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 44.30  E-value: 2.94e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 492 PAKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEA----------------LHYYKLAI- 554
Cdd:TIGR02917 192 NVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAekhadallkkapnsplAHYLKALVd 271

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 555 -------GSRPTLASA------YLNT----GIILMNQGRTEEAR---RTFLKcsEIPDenlkDPHAHKSSVTSCLynlgk 614
Cdd:TIGR02917 272 fqkknyeDARETLQDAlksapeYLPAlllaGASEYQLGNLEQAYqylNQILK--YAPN----SHQARRLLASIQL----- 340

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 2462530241 615 lyhEQGHYEEALSVYKEAIQKMPRQFApqsLYNMMGEAYMRLSKLPEAE 663
Cdd:TIGR02917 341 ---RLGRVDEAIATLSPALGLDPDDPA---ALSLLGEAYLALGDFEKAA 383
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 498-558 3.07e-04

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 39.63  E-value: 3.07e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462530241 498 NLGNVLKSQSKISEAESAYRNAL---YYRSNMADMLYNLGLLLQENSRFAEALHYYKLAIGSRP 558
Cdd:pfam13432   2 ALARAALRAGDYDDAAAALEAALarfPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAP 65
BamD COG4105
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope ...
 561-661 3.28e-04

Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443281 [Multi-domain]  Cd Length: 254  Bit Score: 42.95  E-value: 3.28e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 561 ASAYLNTGIILMNQGRTEEARRTFlkcseipdENLKD-----PHAHKSsvtscLYNLGKLYHEQGHYEEALSVYKEAIQK 635
Cdd:COG4105    32 AEELYEEAKEALEKGDYEKAIKLF--------EELEPrypgsPYAEQA-----QLMLAYAYYKQGDYEEAIAAADRFIKL 98

                          90       100
                  ....*....|....*....|....*..
gi 2462530241 636 MPR-QFAPQSLYnMMGEAYMRLSKLPE 661
Cdd:COG4105    99 YPNsPNADYAYY-LRGLSYYEQSPDSD 124
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 470-690 7.32e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 42.76  E-value: 7.32e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 470 TAIRNGDWQNEEMLYRSGIKVNPAKA--WGNLGNVLKSQSKISEAESAYRNAL-----YY--RSNMADMLY--------- 531
Cdd:TIGR02917 440 SYLRSGQFDKALAAAKKLEKKQPDNAslHNLLGAIYLGKGDLAKAREAFEKALsiepdFFpaAANLARIDIqegnpddai 519

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 532 ------------NLGLLLQ------ENSRFAEALHYYKLAIGSRPTLASAYLNTGIILMNQGRTEEARrtflkcsEIPDE 593
Cdd:TIGR02917 520 qrfekvltidpkNLRAILAlaglylRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKAL-------AILNE 592

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 594 NLKdphAHKSSVtSCLYNLGKLYHEQGHYEEALSVYKEAIQKMPRQFAPQSLynmMGEAYMRLSKLPEAEHWYMESLRSK 673
Cdd:TIGR02917 593 AAD---AAPDSP-EAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLL---LADAYAVMKNYAKAITSLKRALELK 665

                         250
                  ....*....|....*..
gi 2462530241 674 TDHIPAHLTYGKLLALT 690
Cdd:TIGR02917 666 PDNTEAQIGLAQLLLAA 682
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 471-583 9.21e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 42.76  E-value: 9.21e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 471 AIRNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKsQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALH 548
Cdd:TIGR02917 780 YLAQKDYDKAIKHYQTVVKKAPdnAVVLNNLAWLYL-ELKDPRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALP 858

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2462530241 549 YYKLAIGSRPTLASAYLNTGIILMNQGRTEEARRT 583
Cdd:TIGR02917 859 LLRKAVNIAPEAAAIRYHLALALLATGRKAEARKE 893
TPR_19 pfam14559
Tetratricopeptide repeat;
542-602 1.10e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 37.95  E-value: 1.10e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462530241 542 RFAEALHYYKLAIGSRPTLASAYLNTGIILMNQGRTEEARRTFlkcSEIPDENLKDPHAHK 602
Cdd:pfam14559   3 DYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALL---AALPAADPDDPRYAA 60
TPR_1 pfam00515
Tetratricopeptide repeat;
493-520 1.66e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 36.24  E-value: 1.66e-03
                          10        20
                  ....*....|....*....|....*...
gi 2462530241 493 AKAWGNLGNVLKSQSKISEAESAYRNAL 520
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKAL 28
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 610-676 2.28e-03

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 36.93  E-value: 2.28e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462530241 610 YNLGKLYHEQGHYEEALSVYKEAIQKMPRQ-FAPQSLYNMmGEAYMRLSKLPEAEHWYMESLRSKTDH 676
Cdd:pfam13432   1 LALARAALRAGDYDDAAAALEAALARFPESpDAAAALLLL-GLAALRQGRLAEAAAAYRAALRAAPGD 67
TPR_10 pfam13374
Tetratricopeptide repeat;
605-634 2.43e-03

Tetratricopeptide repeat;


Pssm-ID: 463861 [Multi-domain]  Cd Length: 42  Bit Score: 36.33  E-value: 2.43e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 2462530241 605 VTSCLYNLGKLYHEQGHYEEALSVYKEAIQ 634
Cdd:pfam13374   1 TASSLNNLANALRAQGRYDEAEELLEEALA 30
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 565-634 2.86e-03

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 36.93  E-value: 2.86e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462530241 565 LNTGIILMNQGRTEEARRTFlkcSEIPDENLKDPHAHkssvtSCLYNLGKLYHEQGHYEEALSVYKEAIQ 634
Cdd:pfam13432   1 LALARAALRAGDYDDAAAAL---EAALARFPESPDAA-----AALLLLGLAALRQGRLAEAAAAYRAALR 62
TPR_8 pfam13181
Tetratricopeptide repeat;
609-634 2.90e-03

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 35.84  E-value: 2.90e-03
                          10        20
                  ....*....|....*....|....*.
gi 2462530241 609 LYNLGKLYHEQGHYEEALSVYKEAIQ 634
Cdd:pfam13181   4 YYNLGLIYLKLGDYEEAKEYYEKALE 29
TPR_11 pfam13414
TPR repeat;
500-540 4.23e-03

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 35.53  E-value: 4.23e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 2462530241 500 GNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQEN 540
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKL 41
TPR_1 pfam00515
Tetratricopeptide repeat;
527-554 4.62e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 35.09  E-value: 4.62e-03
                          10        20
                  ....*....|....*....|....*...
gi 2462530241 527 ADMLYNLGLLLQENSRFAEALHYYKLAI 554
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKAL 28
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 493-520 6.28e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 34.73  E-value: 6.28e-03
                           10        20
                   ....*....|....*....|....*...
gi 2462530241  493 AKAWGNLGNVLKSQSKISEAESAYRNAL 520
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKAL 28
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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