|
Name |
Accession |
Description |
Interval |
E-value |
| Nop14 |
pfam04147 |
Nop14-like family; Emg1 and Nop14 are novel proteins whose interaction is required for the ... |
30-776 |
0e+00 |
|
Nop14-like family; Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production.
Pssm-ID: 461196 Cd Length: 835 Bit Score: 804.53 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 634743227 30 NPFEVKVNRQKFQILGRKTRHDVGLPGVSRARALRKRTQTLLKEYKERDKSNVFRDKRFGEYNSNMSPEEKMMKRFALEQ 109
Cdd:pfam04147 9 NPFEVKVNKPKFDVLGRKTKGDVGRPGVSRSAAEEKRKKTLLKEYQRRNKSGGFVDRRFGENDPTMSPEEKMLERFTRER 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 634743227 110 QRHHEKKSIYNLNEDEE--LTHYGQSLADIEKHNDIVDSDSDAEDRGTLSAELT-AAHFGGGGGLlhkktqqEGEEREKP 186
Cdd:pfam04147 89 QRKSKKKSMFNLEDDEEegLTHYGQSLSDIDDFDDDDDDDSEEEEDGQLDLKRVrRAHFGGGEDD-------EEEEPERK 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 634743227 187 KSRKELIEELIAKSKQEKRERQAQREDALELTEKLDQDWKEIQTLLSHKTPKSENRDKKEKPKP------DAYDMMVREL 260
Cdd:pfam04147 162 KSKKEVMEEVIAKSKLHKYERQKAKEEDEELREELDKELKDLRSLLSGSKRPKPEQAKKPEEKPdrkkpdDDYDKLVREL 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 634743227 261 GFEMKAQPSNRMKTEAELAKEEQEHLRKLEAERLRRMLGK---DEDENVKKPKHMSADDLNDGFVLDK--DDRRLLSYKD 335
Cdd:pfam04147 242 AFDKRAKPSDRTKTEEELAEEEKERLEKLEEERLRRMRGEedeEEEDGKKKKKHKSADDLDDDFVVDDddDDEEFGLGKG 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 634743227 336 GKM---------NVEEDVQEEQSKEASDPESNEEEGDSSGGEDTEESDSPDSHLDLESNVESEEENEKPAKEQRQTPGKG 406
Cdd:pfam04147 322 IKErptatelgdEDEDDFIIDDDLVESESDLELDEEEEDEEEEDDEDEDEEEEEDDDDLSDLESEEDEEDDEFEEEKKKK 401
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 634743227 407 LISGKEragkATRDELPYTFAAPESYEELRSLLLGRSMEEQLLVVERIQKCNHPSLAEGNKAKLEKLFGFLLEYVGDLAT 486
Cdd:pfam04147 402 KKKDEE----GAKEELPYTFPCPESHEEFLELLEGHSPEDLPTVVQRIRALHHPSLAEGNKEKLQKFFGVLLQHILYLAS 477
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 634743227 487 -DDPPDLTVIDKLVVHLYHLCQMFPESASDAIKFVLRDAMHEMEemietKGRAALPGLDVLIYLKITGLLFPTSDFWHPV 565
Cdd:pfam04147 478 qPPPPEFKVLESLVRHLHSLAKMFPEEAAECFREKLREMYKNRP-----KGLSTWPSLGDLILLRLIGLLFPTSDFFHPV 552
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 634743227 566 VTPALVCLSQLLTKCPILSLQDVVKGLFVCCLFLEYVALSQRFIPELINFLLGILYIATPNKASQgSTLVHPFRALGKNS 645
Cdd:pfam04147 553 VTPALLLMGEYLGQCPIRSLQDIASGLFLCTLALQYQSLSKRYVPEVINFLLNTLLLLAPSKPKK-VPGVFPFREVGKPS 631
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 634743227 646 ELLvvSAREDVATWQQSSLSLRWASRLRAPTST-EANHIRLSCLAVGLALLKRCVLMYGSLPSFHAIMGPLQALLTDHLA 724
Cdd:pfam04147 632 KLL--KSIKESSTSEKTPRKLSLSDLLTESSSSsETDSLKLSLLSTTLSLLDAFADLYSGLPAFPEIFEPILRLLQHLLN 709
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*.
gi 634743227 725 DCSHPQELQELCQSTLTEMESQKQLC----RPLTCEKSKPVPLKLFTPRLVSNSRP 776
Cdd:pfam04147 710 KKLLPKALQEKLESLLDKLERLLKFArlsrRPLELQKHKPLPIKTYIPKFEENYDP 765
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
61-370 |
4.17e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.91 E-value: 4.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 634743227 61 RALRKRTQTLLKEYKERDKSNVFR---DKRFGEYNSNMSPEEKMMKRFALEQQRHHEKKSIYNLNEDEELTHygqsladI 137
Cdd:PTZ00121 1517 KAEEAKKADEAKKAEEAKKADEAKkaeEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKK-------A 1589
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 634743227 138 EKHNDIVDSDSDAEDRGTLSAELTAAHFGGGGGLLHKKtqqEGEEREKPKSRKELIEELIAKSKQEKRERQAQREDALEL 217
Cdd:PTZ00121 1590 EEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKK---AEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEE 1666
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 634743227 218 TEKLDQDWKEIQTLlshKTPKSENRDKKEKPKPDAYDMMVRElgfEMKAQPSNRMKTEAELAKEEQEhlRKLEAERLRRM 297
Cdd:PTZ00121 1667 AKKAEEDKKKAEEA---KKAEEDEKKAAEALKKEAEEAKKAE---ELKKKEAEEKKKAEELKKAEEE--NKIKAEEAKKE 1738
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 634743227 298 ----------LGKDEDENvKKPKHMSADDLNDGFVLDKDDRRLLsyKDGKMNVEEDVQEEQSKEASDPESNEEEGDSSGG 367
Cdd:PTZ00121 1739 aeedkkkaeeAKKDEEEK-KKIAHLKKEEEKKAEEIRKEKEAVI--EEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGK 1815
|
...
gi 634743227 368 EDT 370
Cdd:PTZ00121 1816 EGN 1818
|
|
| CDC37_N |
smart01071 |
Cdc37 N terminal kinase binding; Cdc37 is a molecular chaperone required for the activity of ... |
202-321 |
1.14e-04 |
|
Cdc37 N terminal kinase binding; Cdc37 is a molecular chaperone required for the activity of numerous eukaryotic protein kinases. This domain corresponds to the N terminal domain which binds predominantly to protein kinases.and is found N terminal to the Hsp (Heat shocked protein) 90-binding domain. Expression of a construct consisting of only the N-terminal domain of Saccharomyces pombe Cdc37 results in cellular viability. This indicates that interactions with the cochaperone Hsp90 may not be essential for Cdc37 function.
Pssm-ID: 198139 [Multi-domain] Cd Length: 154 Bit Score: 43.17 E-value: 1.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 634743227 202 QEKRERQAQREDALELTEKLDQDWKEIQTLLSHKtpksenRDKKEKPKPDAYDMMVRELGFEMKAQPSNRMKTEAELAKE 281
Cdd:smart01071 39 QARVERMEEIKNLKYELIMNDHLNKRIDKLLKGL------REEELSPETPTYNEMLAELQDQLKKELEEANGDSEGLLEE 112
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 634743227 282 EQEHLRKLEAErLRRMLGKDEDENVKKPKHMSADDLNDGF 321
Cdd:smart01071 113 LKKHRDKLKKE-QKELRKKLDELEKEEKKKIWSVDTHTGF 151
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
175-377 |
4.80e-04 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 43.83 E-value: 4.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 634743227 175 KTQQEGEEREKPKSRKELIEELIAKSKQEKRERQAQREDALELTE-KLDQDWKEIQTllshktpkseNRDKKEKPKPDAY 253
Cdd:TIGR00927 678 ENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEaEGTEDEGEIET----------GEEGEEVEDEGEG 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 634743227 254 DMMVRELGFEMKAQPSNRMKTEAELAKEEQEHLRKLEAERLRRMLGKDEDENVKKPKHMSADDLNDGFVLDKDDRRLLSY 333
Cdd:TIGR00927 748 EAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTE 827
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 634743227 334 KDGKMNVEEDVQEEQSKEASDPESNEEEGDSSGGEDTEESDSPD 377
Cdd:TIGR00927 828 VKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEE 871
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Nop14 |
pfam04147 |
Nop14-like family; Emg1 and Nop14 are novel proteins whose interaction is required for the ... |
30-776 |
0e+00 |
|
Nop14-like family; Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production.
Pssm-ID: 461196 Cd Length: 835 Bit Score: 804.53 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 634743227 30 NPFEVKVNRQKFQILGRKTRHDVGLPGVSRARALRKRTQTLLKEYKERDKSNVFRDKRFGEYNSNMSPEEKMMKRFALEQ 109
Cdd:pfam04147 9 NPFEVKVNKPKFDVLGRKTKGDVGRPGVSRSAAEEKRKKTLLKEYQRRNKSGGFVDRRFGENDPTMSPEEKMLERFTRER 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 634743227 110 QRHHEKKSIYNLNEDEE--LTHYGQSLADIEKHNDIVDSDSDAEDRGTLSAELT-AAHFGGGGGLlhkktqqEGEEREKP 186
Cdd:pfam04147 89 QRKSKKKSMFNLEDDEEegLTHYGQSLSDIDDFDDDDDDDSEEEEDGQLDLKRVrRAHFGGGEDD-------EEEEPERK 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 634743227 187 KSRKELIEELIAKSKQEKRERQAQREDALELTEKLDQDWKEIQTLLSHKTPKSENRDKKEKPKP------DAYDMMVREL 260
Cdd:pfam04147 162 KSKKEVMEEVIAKSKLHKYERQKAKEEDEELREELDKELKDLRSLLSGSKRPKPEQAKKPEEKPdrkkpdDDYDKLVREL 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 634743227 261 GFEMKAQPSNRMKTEAELAKEEQEHLRKLEAERLRRMLGK---DEDENVKKPKHMSADDLNDGFVLDK--DDRRLLSYKD 335
Cdd:pfam04147 242 AFDKRAKPSDRTKTEEELAEEEKERLEKLEEERLRRMRGEedeEEEDGKKKKKHKSADDLDDDFVVDDddDDEEFGLGKG 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 634743227 336 GKM---------NVEEDVQEEQSKEASDPESNEEEGDSSGGEDTEESDSPDSHLDLESNVESEEENEKPAKEQRQTPGKG 406
Cdd:pfam04147 322 IKErptatelgdEDEDDFIIDDDLVESESDLELDEEEEDEEEEDDEDEDEEEEEDDDDLSDLESEEDEEDDEFEEEKKKK 401
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 634743227 407 LISGKEragkATRDELPYTFAAPESYEELRSLLLGRSMEEQLLVVERIQKCNHPSLAEGNKAKLEKLFGFLLEYVGDLAT 486
Cdd:pfam04147 402 KKKDEE----GAKEELPYTFPCPESHEEFLELLEGHSPEDLPTVVQRIRALHHPSLAEGNKEKLQKFFGVLLQHILYLAS 477
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 634743227 487 -DDPPDLTVIDKLVVHLYHLCQMFPESASDAIKFVLRDAMHEMEemietKGRAALPGLDVLIYLKITGLLFPTSDFWHPV 565
Cdd:pfam04147 478 qPPPPEFKVLESLVRHLHSLAKMFPEEAAECFREKLREMYKNRP-----KGLSTWPSLGDLILLRLIGLLFPTSDFFHPV 552
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 634743227 566 VTPALVCLSQLLTKCPILSLQDVVKGLFVCCLFLEYVALSQRFIPELINFLLGILYIATPNKASQgSTLVHPFRALGKNS 645
Cdd:pfam04147 553 VTPALLLMGEYLGQCPIRSLQDIASGLFLCTLALQYQSLSKRYVPEVINFLLNTLLLLAPSKPKK-VPGVFPFREVGKPS 631
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 634743227 646 ELLvvSAREDVATWQQSSLSLRWASRLRAPTST-EANHIRLSCLAVGLALLKRCVLMYGSLPSFHAIMGPLQALLTDHLA 724
Cdd:pfam04147 632 KLL--KSIKESSTSEKTPRKLSLSDLLTESSSSsETDSLKLSLLSTTLSLLDAFADLYSGLPAFPEIFEPILRLLQHLLN 709
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*.
gi 634743227 725 DCSHPQELQELCQSTLTEMESQKQLC----RPLTCEKSKPVPLKLFTPRLVSNSRP 776
Cdd:pfam04147 710 KKLLPKALQEKLESLLDKLERLLKFArlsrRPLELQKHKPLPIKTYIPKFEENYDP 765
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
61-370 |
4.17e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.91 E-value: 4.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 634743227 61 RALRKRTQTLLKEYKERDKSNVFR---DKRFGEYNSNMSPEEKMMKRFALEQQRHHEKKSIYNLNEDEELTHygqsladI 137
Cdd:PTZ00121 1517 KAEEAKKADEAKKAEEAKKADEAKkaeEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKK-------A 1589
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 634743227 138 EKHNDIVDSDSDAEDRGTLSAELTAAHFGGGGGLLHKKtqqEGEEREKPKSRKELIEELIAKSKQEKRERQAQREDALEL 217
Cdd:PTZ00121 1590 EEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKK---AEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEE 1666
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 634743227 218 TEKLDQDWKEIQTLlshKTPKSENRDKKEKPKPDAYDMMVRElgfEMKAQPSNRMKTEAELAKEEQEhlRKLEAERLRRM 297
Cdd:PTZ00121 1667 AKKAEEDKKKAEEA---KKAEEDEKKAAEALKKEAEEAKKAE---ELKKKEAEEKKKAEELKKAEEE--NKIKAEEAKKE 1738
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 634743227 298 ----------LGKDEDENvKKPKHMSADDLNDGFVLDKDDRRLLsyKDGKMNVEEDVQEEQSKEASDPESNEEEGDSSGG 367
Cdd:PTZ00121 1739 aeedkkkaeeAKKDEEEK-KKIAHLKKEEEKKAEEIRKEKEAVI--EEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGK 1815
|
...
gi 634743227 368 EDT 370
Cdd:PTZ00121 1816 EGN 1818
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
2-374 |
8.28e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.75 E-value: 8.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 634743227 2 AKAKKVGARRKASGAPAGARGGPAKANSNPFEVKVNRQKFQILGRKTRHDVGLPGVSRARALRKRTQTLLKEYKERDKSN 81
Cdd:PTZ00121 1327 AKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKK 1406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 634743227 82 VFRDKRFGEynSNMSPEEkmMKRFALEQQRHHE-KKSIYNLNEDEELTHYGQSLADIEKHNDIVDSDSDAEDRGTLSAEL 160
Cdd:PTZ00121 1407 ADELKKAAA--AKKKADE--AKKKAEEKKKADEaKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEA 1482
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 634743227 161 TAAHFGGGGGLLHKKTQQEGEEREKPKSRKELIEELIAKSKQEKRERQAQREDALELtEKLDQDWKEIQTLLSHKTPKSE 240
Cdd:PTZ00121 1483 KKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEA-KKAEEKKKADELKKAEELKKAE 1561
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 634743227 241 NRDKKEKPKPDAYD--MMVR---ELGFEMKAQPSNRMKTEAELAKEEQEHLRKLEAERLRRMLGKDEDENVKKP---KHM 312
Cdd:PTZ00121 1562 EKKKAEEAKKAEEDknMALRkaeEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVeqlKKK 1641
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 634743227 313 SADDLNDGFVLDK--DDRRLLSYKDGKMNVEEDVQEEQSKEASDPESNEEEGDSSGGEDTEESD 374
Cdd:PTZ00121 1642 EAEEKKKAEELKKaeEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAE 1705
|
|
| CDC37_N |
smart01071 |
Cdc37 N terminal kinase binding; Cdc37 is a molecular chaperone required for the activity of ... |
202-321 |
1.14e-04 |
|
Cdc37 N terminal kinase binding; Cdc37 is a molecular chaperone required for the activity of numerous eukaryotic protein kinases. This domain corresponds to the N terminal domain which binds predominantly to protein kinases.and is found N terminal to the Hsp (Heat shocked protein) 90-binding domain. Expression of a construct consisting of only the N-terminal domain of Saccharomyces pombe Cdc37 results in cellular viability. This indicates that interactions with the cochaperone Hsp90 may not be essential for Cdc37 function.
Pssm-ID: 198139 [Multi-domain] Cd Length: 154 Bit Score: 43.17 E-value: 1.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 634743227 202 QEKRERQAQREDALELTEKLDQDWKEIQTLLSHKtpksenRDKKEKPKPDAYDMMVRELGFEMKAQPSNRMKTEAELAKE 281
Cdd:smart01071 39 QARVERMEEIKNLKYELIMNDHLNKRIDKLLKGL------REEELSPETPTYNEMLAELQDQLKKELEEANGDSEGLLEE 112
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 634743227 282 EQEHLRKLEAErLRRMLGKDEDENVKKPKHMSADDLNDGF 321
Cdd:smart01071 113 LKKHRDKLKKE-QKELRKKLDELEKEEKKKIWSVDTHTGF 151
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
46-473 |
2.25e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.13 E-value: 2.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 634743227 46 RKTRHDVGLPGVSRARALRKRTQTLLKEYKERDKSNV--FRDKRFGEYNSNMSPEEKMMKRFALEQQRHHEKKSIYNLNE 123
Cdd:PTZ00121 1218 RKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIrkFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKK 1297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 634743227 124 DEELTHYGQSLADIEKHNDIVDSDSDAEDRGTLSAELTaahfgggggllhKKTQQEGEEREKPKSRKELIEELIAKSKQE 203
Cdd:PTZ00121 1298 AEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAK------------KKAEEAKKAAEAAKAEAEAAADEAEAAEEK 1365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 634743227 204 KRERQAQREDALELTEKLDQDWKEIQTLLSHKTPKSENRDK--------KEKPKPDAYDMMVRELGFEMKAQPSNRMKTE 275
Cdd:PTZ00121 1366 AEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKadelkkaaAAKKKADEAKKKAEEKKKADEAKKKAEEAKK 1445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 634743227 276 AELAKEEQEHLRKLEAERLRRMLGKDEDENVKKPKHM-SADDL-NDGFVLDKDDRRLLSYKDGKMNVEEDVQEEQSKEAS 353
Cdd:PTZ00121 1446 ADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAkKADEAkKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKAD 1525
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 634743227 354 DPESNEEEGDSSGGEDTEESDSPDshlDLESNVESEEENEKPAKEQRQTPGKGLISGKERAGKATRDELPYTFAAPESYE 433
Cdd:PTZ00121 1526 EAKKAEEAKKADEAKKAEEKKKAD---ELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYE 1602
|
410 420 430 440
....*....|....*....|....*....|....*....|..
gi 634743227 434 ELRSLLL--GRSMEEQLLVVERIQKcnhpslAEGNKAKLEKL 473
Cdd:PTZ00121 1603 EEKKMKAeeAKKAEEAKIKAEELKK------AEEEKKKVEQL 1638
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
181-371 |
4.51e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.98 E-value: 4.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 634743227 181 EEREKPKSRKELIEELIAKSKQEKRERQAQREDALELTEKLDQDWKEIQTLLSHKTPKSENRDKKEKPKPDAYDMMVREL 260
Cdd:PTZ00121 1585 EAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAA 1664
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 634743227 261 GFEMKAQPSNRMKTEAELAKEEQ---EHLRKLEAERLRRM--LGKDEDENVKKPKHMSADDLNDGFVLDKDDRRllSYKD 335
Cdd:PTZ00121 1665 EEAKKAEEDKKKAEEAKKAEEDEkkaAEALKKEAEEAKKAeeLKKKEAEEKKKAEELKKAEEENKIKAEEAKKE--AEED 1742
|
170 180 190
....*....|....*....|....*....|....*.
gi 634743227 336 GKMNVEEDVQEEQSKEASDPESNEEEGDSSGGEDTE 371
Cdd:PTZ00121 1743 KKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKE 1778
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
175-377 |
4.80e-04 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 43.83 E-value: 4.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 634743227 175 KTQQEGEEREKPKSRKELIEELIAKSKQEKRERQAQREDALELTE-KLDQDWKEIQTllshktpkseNRDKKEKPKPDAY 253
Cdd:TIGR00927 678 ENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEaEGTEDEGEIET----------GEEGEEVEDEGEG 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 634743227 254 DMMVRELGFEMKAQPSNRMKTEAELAKEEQEHLRKLEAERLRRMLGKDEDENVKKPKHMSADDLNDGFVLDKDDRRLLSY 333
Cdd:TIGR00927 748 EAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTE 827
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 634743227 334 KDGKMNVEEDVQEEQSKEASDPESNEEEGDSSGGEDTEESDSPD 377
Cdd:TIGR00927 828 VKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEE 871
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
33-373 |
5.74e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.81 E-value: 5.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 634743227 33 EVKVNRQKFQILGRKTRHDVGLPGvSRARALRKRTQTLLKEYKERDKSNVFRDKRFGEYNSNMSPEEKMMKRfaleQQRH 112
Cdd:pfam02463 633 ELTKLKESAKAKESGLRKGVSLEE-GLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKK----KEQR 707
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 634743227 113 HEKKSIYNLNEDEELTHYGQSLADIEKHNDIVDSDSDAEDRGTLSAELTAAHFGGGGGLLHKKTQQEGEEREKPKSRKEL 192
Cdd:pfam02463 708 EKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLK 787
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 634743227 193 IE---ELIAKSKQEKRERQAQREDALELTEKLDQDWKEIQTLLSHKTPKSENRDKKEKpkpdaydmMVRELGFEMKAQPS 269
Cdd:pfam02463 788 VEeekEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEE--------QKLEKLAEEELERL 859
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 634743227 270 NRMKTEAELAKEEQEHLRKLEAERLRRMLGKDEDENVKKPKHMSADDLNDGFVLDKDDRRLLSYKDGKMNVEEDvqEEQS 349
Cdd:pfam02463 860 EEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKY--EEEP 937
|
330 340
....*....|....*....|....
gi 634743227 350 KEASDPESNEEEGDSSGGEDTEES 373
Cdd:pfam02463 938 EELLLEEADEKEKEENNKEEEEER 961
|
|
| PRK05901 |
PRK05901 |
RNA polymerase sigma factor; Provisional |
184-378 |
2.07e-03 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 235640 [Multi-domain] Cd Length: 509 Bit Score: 41.52 E-value: 2.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 634743227 184 EKPKSRKELIEELIAKSKQEKRERQAQREDALELTEKLDQDWKEIqtllshKTPKSENRDKKEKPKPDAydmmvrelgfe 263
Cdd:PRK05901 25 AKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDA------TESDIPKKKTKTAAKAAA----------- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 634743227 264 mKAQPSNRmKTEAELAKEEQEHLRKLEAERLRRMLGKDEDENVKKPKHMSADDLNDGFVLDKDDrrllSYKDGKMNVEED 343
Cdd:PRK05901 88 -AKAPAKK-KLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDD----DDDDEDDDEDDD 161
|
170 180 190
....*....|....*....|....*....|....*
gi 634743227 344 VQEEQSKEASDPESNEEEGDSSGGEDTEESDSPDS 378
Cdd:PRK05901 162 DDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEA 196
|
|
| DUF612 |
pfam04747 |
Protein of unknown function, DUF612; This family includes several uncharacterized proteins ... |
174-309 |
2.42e-03 |
|
Protein of unknown function, DUF612; This family includes several uncharacterized proteins from Caenorhabditis elegans.
Pssm-ID: 282585 [Multi-domain] Cd Length: 511 Bit Score: 41.20 E-value: 2.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 634743227 174 KKTQQEGEEREKPKSRKELIEELIAKSKQEKRERQAQREDALELTEKLDQDWKEIQTLLSHKTPKSENRDKKEKPKPDAY 253
Cdd:pfam04747 96 KAAEKEARRAEAEAKKRAAQEEEHKQWKAEQERIQKEQEKKEADLKKLQAEKKKEKAVKAEKAEKAEKTKKASTPAPVEE 175
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 634743227 254 DMMVRELGFEMKAQPSNRMKTEAELAKEEQEHLRKLEAERLRRMLGKDEDENVKKP 309
Cdd:pfam04747 176 EIVVKKVANDRSAAPAPEPKTPTNTPAEPAEQVQEITGKKNKKNKKKSESEATAAP 231
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
174-304 |
3.49e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.88 E-value: 3.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 634743227 174 KKTQQEGEEREKPKSRKELIEELIAKSKQEKRERQAQR---EDALELtEKLDQDWKEIQTLLSHKTPKSENRDKKEKPkp 250
Cdd:pfam17380 402 RKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRleeERAREM-ERVRLEEQERQQQVERLRQQEEERKRKKLE-- 478
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 634743227 251 daydmMVRELGFEMKAQPSNRMKTEAELAKEEQehlRKLEAERLRRMLGKDEDE 304
Cdd:pfam17380 479 -----LEKEKRDRKRAEEQRRKILEKELEERKQ---AMIEEERKRKLLEKEMEE 524
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
98-296 |
7.39e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.04 E-value: 7.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 634743227 98 EEKMMKRFALEQQRHHEKKSIYNLNE-----DEELTHYGQSLADIEKHNDIVDSDSDAEDR--GTLSAELTAahfggggg 170
Cdd:TIGR02168 270 EELRLEVSELEEEIEELQKELYALANeisrlEQQKQILRERLANLERQLEELEAQLEELESklDELAEELAE-------- 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 634743227 171 LLHKKTQQEGE---EREKPKSRKELIEELIAKSKQEKRERQAQREDALELTEKLDQDWKEIQTLLSHKTPKSENRDKKEK 247
Cdd:TIGR02168 342 LEEKLEELKEElesLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQ 421
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 634743227 248 PKPDAYDMMVRELGFEMKAQPSNRMKTEAELAKEEQEHLRKLEAERLRR 296
Cdd:TIGR02168 422 EIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREEL 470
|
|
| |
