|
Name |
Accession |
Description |
Interval |
E-value |
| PRK13596 |
PRK13596 |
NADH-quinone oxidoreductase subunit NuoF; |
35-453 |
0e+00 |
|
NADH-quinone oxidoreductase subunit NuoF;
Pssm-ID: 237441 Cd Length: 433 Bit Score: 865.05 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20149568 35 LKDEDRIFTNLYGRHDWRLKGSLSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLV 114
Cdd:PRK13596 2 LKDKDRIFTNLYGLQDWSLKGAKKRGDWDGTKAILDKGRDWIIEEMKASGLRGRGGAGFPTGLKWSFMPKESDGRPHYLV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20149568 115 VNADEGEPGTCKDREILRHDPHKLLEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFD 194
Cdd:PRK13596 82 VNADESEPGTCKDRDILRHDPHKLIEGCLIASFAMGAHAAYIYIRGEFIREREALQAAIDEAYEAGLIGKNACGSGWDFD 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20149568 195 VFVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 274
Cdd:PRK13596 162 IYVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGAAWFASIGRPNNTGTK 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20149568 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAV 354
Cdd:PRK13596 242 LFCISGHVNKPCNVEEAMGIPFRELIEKHAGGVRGGWDNLLAVIPGGSSVPLIPAEQCEDAIMDFDSLRAVGSGLGTAAV 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20149568 355 IVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWP 434
Cdd:PRK13596 322 IVMDKSTDIIKAIARLSYFYKHESCGQCTPCREGTGWMWRVMERMVKGRAQKREIDMLLDVTKQIEGHTICALGDAAAWP 401
|
410
....*....|....*....
gi 20149568 435 VQGLIRHFRPELEERMQRF 453
Cdd:PRK13596 402 IQGLIRHFRPEIEERIDQY 420
|
|
| nuoF_fam |
TIGR01959 |
NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that ... |
40-449 |
0e+00 |
|
NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. [Energy metabolism, Electron transport]
Pssm-ID: 131014 Cd Length: 411 Bit Score: 672.89 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20149568 40 RIFTNLYGRHDWRLKGSLSRGDWYKTKEILLK-GPDWILGEIKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNAD 118
Cdd:TIGR01959 1 VLTTNLDNPESWTLEEYEKRGGYDALRKALEEmSPDDIIEEVKDSGLRGRGGAGFPTGLKWSFMPKDDSPKPKYLVCNAD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20149568 119 EGEPGTCKDREILRHDPHKLLEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVV 198
Cdd:TIGR01959 81 ESEPGTCKDRDLMEFDPHQLIEGMIIAAYAIGAHRGYIYIRGEFIKEAENLEAAIAEAYAAGLLGKNILGSGFDFELFVH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20149568 199 RGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTKLFNI 278
Cdd:TIGR01959 161 RGAGAYICGEETALLESLEGKRGQPRLKPPFPAVFGLYGKPTVINNVETLASVPAILRRGADWYRKLGKEKSPGTKLFSV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20149568 279 SGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWdNLLAVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMD 358
Cdd:TIGR01959 241 SGHVNKPGNYELPLGTPLRELLEDYAGGMRGGW-KLKAVIPGGSSTPVLPAEQHLDAPMDYDSLAAAGSMLGTGAVIVMD 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20149568 359 RSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGL 438
Cdd:TIGR01959 320 ESTCMVKAVRRLSEFYAHESCGQCTPCREGTGWMVKILERIEEGEGTKEDIDLLLSVCKQIEGKTICALGDAAAWPVQSA 399
|
410
....*....|.
gi 20149568 439 IRHFRPELEER 449
Cdd:TIGR01959 400 IKHFRDEFEAH 410
|
|
| NuoF |
COG1894 |
NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) [Energy production and ... |
41-451 |
0e+00 |
|
NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) [Energy production and conversion]; NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 441498 [Multi-domain] Cd Length: 418 Bit Score: 661.32 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20149568 41 IFTNLYGRHDWRLKGSLSRGDWYKTKEILLK-GPDWILGEIKTSGLRGRGGAGFPTGLKWSFMNKpSDGRPKYLVVNADE 119
Cdd:COG1894 7 LLRNCGIIDPESLEDYIARGGYQALRKALTEmTPEEVIEEVKDSGLRGRGGAGFPTGLKWSFVPK-APGDPKYLVCNADE 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20149568 120 GEPGTCKDREILRHDPHKLLEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVR 199
Cdd:COG1894 86 GEPGTFKDRSLLEGDPHQLIEGMIIAAYAIGATKGYIYIRGEYPLAIERLEKAIEEAREAGLLGKNILGSGFDFDIEVHR 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20149568 200 GAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTKLFNIS 279
Cdd:COG1894 166 GAGAYICGEETALLESLEGKRGQPRLKPPFPAVSGLWGKPTVVNNVETLANVPHIIRNGAEWFASIGTEKSKGTKLFSLS 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20149568 280 GHVNHPCTVEEEMSVPLKELIEKHAGGVTGGwDNLLAVIPGGSSTPLIPKSvCETVLMDFDALVQAQTGLGTAAVIVMDR 359
Cdd:COG1894 246 GHVKNPGLYEVPMGTTLRELIYDIGGGIRGG-RKLKAVQPGGPSGGCLPAE-HLDTPMDYESLAAAGSMLGSGGMIVMDE 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20149568 360 STDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLI 439
Cdd:COG1894 324 TTCMVDVARFFLEFYAHESCGKCTPCREGTGWMLEILDRIEAGEGTEEDLDLLEDLADTIKGTSLCALGDAAPNPVLSTL 403
|
410
....*....|..
gi 20149568 440 RHFRPELEERMQ 451
Cdd:COG1894 404 KYFRDEFEAHIK 415
|
|
| Complex1_51K |
pfam01512 |
Respiratory-chain NADH dehydrogenase 51 Kd subunit; |
80-249 |
1.85e-62 |
|
Respiratory-chain NADH dehydrogenase 51 Kd subunit;
Pssm-ID: 460237 [Multi-domain] Cd Length: 150 Bit Score: 199.66 E-value: 1.85e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20149568 80 IKTSGLRGRGGAGFPTGLKWSFmnkPSDGRPKYLVVNADEGEPGTCKDREILRHDPHKLLEGCLVGGRAMGARAAYIYIR 159
Cdd:pfam01512 1 VKEAGIVGRGGAGFPTHVKLSP---PPKKKIKYLIVNGAECEPGLTKDRRLMRERPHEIIEGIKIAAYALGAKRGVIGIR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20149568 160 GEFYNEASNLQVAIREAYEAGligknacgsgydFDVFVVRGAGAYICGEETALIESIEGKqGKPRLKPpfPADVGVfgcp 239
Cdd:pfam01512 78 DEKPEAIAALEKAIAEARAAG------------FDIEVHRGAGAYPCGEEKALIYSLTGR-GVPRGKP--PADVGV---- 138
|
170
....*....|
gi 20149568 240 tTVANVETVA 249
Cdd:pfam01512 139 -VVNNVETLA 147
|
|
| NADH_4Fe-4S |
smart00928 |
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; |
364-409 |
4.90e-20 |
|
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region;
Pssm-ID: 197996 [Multi-domain] Cd Length: 46 Bit Score: 82.96 E-value: 4.90e-20
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 20149568 364 VKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDARPAEI 409
Cdd:smart00928 1 VDAARRLMEFYAHESCGKCTPCREGTGWLLEILDRIEEGEGTEEDL 46
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK13596 |
PRK13596 |
NADH-quinone oxidoreductase subunit NuoF; |
35-453 |
0e+00 |
|
NADH-quinone oxidoreductase subunit NuoF;
Pssm-ID: 237441 Cd Length: 433 Bit Score: 865.05 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20149568 35 LKDEDRIFTNLYGRHDWRLKGSLSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLV 114
Cdd:PRK13596 2 LKDKDRIFTNLYGLQDWSLKGAKKRGDWDGTKAILDKGRDWIIEEMKASGLRGRGGAGFPTGLKWSFMPKESDGRPHYLV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20149568 115 VNADEGEPGTCKDREILRHDPHKLLEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFD 194
Cdd:PRK13596 82 VNADESEPGTCKDRDILRHDPHKLIEGCLIASFAMGAHAAYIYIRGEFIREREALQAAIDEAYEAGLIGKNACGSGWDFD 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20149568 195 VFVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 274
Cdd:PRK13596 162 IYVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGAAWFASIGRPNNTGTK 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20149568 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAV 354
Cdd:PRK13596 242 LFCISGHVNKPCNVEEAMGIPFRELIEKHAGGVRGGWDNLLAVIPGGSSVPLIPAEQCEDAIMDFDSLRAVGSGLGTAAV 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20149568 355 IVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWP 434
Cdd:PRK13596 322 IVMDKSTDIIKAIARLSYFYKHESCGQCTPCREGTGWMWRVMERMVKGRAQKREIDMLLDVTKQIEGHTICALGDAAAWP 401
|
410
....*....|....*....
gi 20149568 435 VQGLIRHFRPELEERMQRF 453
Cdd:PRK13596 402 IQGLIRHFRPEIEERIDQY 420
|
|
| PTZ00304 |
PTZ00304 |
NADH dehydrogenase [ubiquinone] flavoprotein 1; Provisional |
15-453 |
0e+00 |
|
NADH dehydrogenase [ubiquinone] flavoprotein 1; Provisional
Pssm-ID: 185547 [Multi-domain] Cd Length: 461 Bit Score: 846.76 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20149568 15 RVSVRFSGDTTAPKKTSFGSLKDEDRIFTNLYGRHDWRLKGSLSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 94
Cdd:PTZ00304 2 RRAQGFLRLTASLLVRVHGGLKDQDRIFTNLYRDFDTYIDGALKRGDWYRTKDILLKGHDWIIDEIKKSGLRGRGGAGFP 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20149568 95 TGLKWSFMNK-PSDGRPKYLVVNADEGEPGTCKDREILRHDPHKLLEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAI 173
Cdd:PTZ00304 82 SGLKWSFMPKvKPDGRPSYLVVNADESEPGTCKDREIMRHDPHKLVEGALLAGFAMRARAAYIYIRGEFYNEARALQQAI 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20149568 174 REAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPT 253
Cdd:PTZ00304 162 DEAYKKGFLGKNACGSGYDFDVYVHRGAGAYICGEETALIESIEGKPGKPRLKPPFPANVGLYGCPTTVTNVETVAVSPT 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20149568 254 ICRRGGTWFAGFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCE 333
Cdd:PTZ00304 242 ILRRGPQWFASFGRPNNAGTKLFCISGHVNNPCTVEEEMSIPLRELIERHCGGVRGGWDNLLCVIPGGSSVPLIPKEICD 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20149568 334 TVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDARPAEIDSLW 413
Cdd:PTZ00304 322 NVLMDFDALKEVQSGLGTAAVIVMDKSTDIIDAILRLSKFYKHESCGQCTPCREGTPWLVKMMERFVVGNADKEEIDTLE 401
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 20149568 414 EISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 453
Cdd:PTZ00304 402 EVSKQIEGHTICALGDAAAWPVQGLIRHFRPEIEERIERY 441
|
|
| PLN03132 |
PLN03132 |
NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional |
27-450 |
0e+00 |
|
NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional
Pssm-ID: 178678 [Multi-domain] Cd Length: 461 Bit Score: 796.00 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20149568 27 PKKTSFGSLKDEDRIFTNLYGRHDWRLKGSLSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFPTGLKWSFMNKPS 106
Cdd:PLN03132 25 PEKTHFGGLKDEDRIFTNLYGLHDPFLKGAMKRGDWHRTKDLVLKGPDWIVNEMKKSGLRGRGGAGFPSGLKWSFMPKVS 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20149568 107 DGRPKYLVVNADEGEPGTCKDREILRHDPHKLLEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNA 186
Cdd:PLN03132 105 DGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRARAAYIYIRGEYVNERLNLERARHEAYAAGLLGKNA 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20149568 187 CGSGYDFDVFVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFG 266
Cdd:PLN03132 185 CGSGYDFDVYIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANVGLYGCPTTVTNVETVAVSPTILRRGPEWFASFG 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20149568 267 RERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDALVQAQ 346
Cdd:PLN03132 265 RKNNAGTKLFCISGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAIIPGGSSVPLLPKKICDDVLMDFDALKAVQ 344
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20149568 347 TGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDARPAEIDSLWEISKQIEGHTICA 426
Cdd:PLN03132 345 SGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWDIMERMKVGNAKLEEIDMLQEVTKQIEGHTICA 424
|
410 420
....*....|....*....|....
gi 20149568 427 LGDGAAWPVQGLIRHFRPELEERM 450
Cdd:PLN03132 425 LGDAAAWPVQGLIRHFRPELERRI 448
|
|
| nuoF_fam |
TIGR01959 |
NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that ... |
40-449 |
0e+00 |
|
NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. [Energy metabolism, Electron transport]
Pssm-ID: 131014 Cd Length: 411 Bit Score: 672.89 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20149568 40 RIFTNLYGRHDWRLKGSLSRGDWYKTKEILLK-GPDWILGEIKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNAD 118
Cdd:TIGR01959 1 VLTTNLDNPESWTLEEYEKRGGYDALRKALEEmSPDDIIEEVKDSGLRGRGGAGFPTGLKWSFMPKDDSPKPKYLVCNAD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20149568 119 EGEPGTCKDREILRHDPHKLLEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVV 198
Cdd:TIGR01959 81 ESEPGTCKDRDLMEFDPHQLIEGMIIAAYAIGAHRGYIYIRGEFIKEAENLEAAIAEAYAAGLLGKNILGSGFDFELFVH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20149568 199 RGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTKLFNI 278
Cdd:TIGR01959 161 RGAGAYICGEETALLESLEGKRGQPRLKPPFPAVFGLYGKPTVINNVETLASVPAILRRGADWYRKLGKEKSPGTKLFSV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20149568 279 SGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWdNLLAVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMD 358
Cdd:TIGR01959 241 SGHVNKPGNYELPLGTPLRELLEDYAGGMRGGW-KLKAVIPGGSSTPVLPAEQHLDAPMDYDSLAAAGSMLGTGAVIVMD 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20149568 359 RSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGL 438
Cdd:TIGR01959 320 ESTCMVKAVRRLSEFYAHESCGQCTPCREGTGWMVKILERIEEGEGTKEDIDLLLSVCKQIEGKTICALGDAAAWPVQSA 399
|
410
....*....|.
gi 20149568 439 IRHFRPELEER 449
Cdd:TIGR01959 400 IKHFRDEFEAH 410
|
|
| NuoF |
COG1894 |
NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) [Energy production and ... |
41-451 |
0e+00 |
|
NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) [Energy production and conversion]; NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 441498 [Multi-domain] Cd Length: 418 Bit Score: 661.32 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20149568 41 IFTNLYGRHDWRLKGSLSRGDWYKTKEILLK-GPDWILGEIKTSGLRGRGGAGFPTGLKWSFMNKpSDGRPKYLVVNADE 119
Cdd:COG1894 7 LLRNCGIIDPESLEDYIARGGYQALRKALTEmTPEEVIEEVKDSGLRGRGGAGFPTGLKWSFVPK-APGDPKYLVCNADE 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20149568 120 GEPGTCKDREILRHDPHKLLEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVR 199
Cdd:COG1894 86 GEPGTFKDRSLLEGDPHQLIEGMIIAAYAIGATKGYIYIRGEYPLAIERLEKAIEEAREAGLLGKNILGSGFDFDIEVHR 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20149568 200 GAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTKLFNIS 279
Cdd:COG1894 166 GAGAYICGEETALLESLEGKRGQPRLKPPFPAVSGLWGKPTVVNNVETLANVPHIIRNGAEWFASIGTEKSKGTKLFSLS 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20149568 280 GHVNHPCTVEEEMSVPLKELIEKHAGGVTGGwDNLLAVIPGGSSTPLIPKSvCETVLMDFDALVQAQTGLGTAAVIVMDR 359
Cdd:COG1894 246 GHVKNPGLYEVPMGTTLRELIYDIGGGIRGG-RKLKAVQPGGPSGGCLPAE-HLDTPMDYESLAAAGSMLGSGGMIVMDE 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20149568 360 STDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLI 439
Cdd:COG1894 324 TTCMVDVARFFLEFYAHESCGKCTPCREGTGWMLEILDRIEAGEGTEEDLDLLEDLADTIKGTSLCALGDAAPNPVLSTL 403
|
410
....*....|..
gi 20149568 440 RHFRPELEERMQ 451
Cdd:COG1894 404 KYFRDEFEAHIK 415
|
|
| PRK11278 |
PRK11278 |
NADH-quinone oxidoreductase subunit NuoF; |
63-447 |
4.56e-118 |
|
NADH-quinone oxidoreductase subunit NuoF;
Pssm-ID: 236891 [Multi-domain] Cd Length: 448 Bit Score: 353.34 E-value: 4.56e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20149568 63 YKTKEILLKG--PDWILGEIKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREILRHDPHKLLE 140
Cdd:PRK11278 36 YEGARKALTGmsPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVE 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20149568 141 GCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIESIEGKQ 220
Cdd:PRK11278 116 GMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRR 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20149568 221 GKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRER--NSGTKLFNISGHVNHPCTVEEEMSVPLKE 298
Cdd:PRK11278 196 ANPRSKPPFPATSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISKGKskDAGTKLMGFSGRVKNPGLWELPFGTTARE 275
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20149568 299 LIEKHAGGVTGGWdNLLAVIPGGSSTP-LIPKSVceTVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHE 377
Cdd:PRK11278 276 ILEDYAGGMRDGL-KFKAWQPGGAGTDfLTEAHL--DLPMEFESIGKAGSRLGTALAMAVDHEINMVSLVRNLEEFFARE 352
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 20149568 378 SCGQCTPCREGVDWMNKVMARFVRGDARPAEIDSLWEISKQI-EGHTICALGDGAAWPVQGLIRHFRPELE 447
Cdd:PRK11278 353 SCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLgPGKTFCAHAPGAVEPLQSAIKYFREEFE 423
|
|
| Complex1_51K |
pfam01512 |
Respiratory-chain NADH dehydrogenase 51 Kd subunit; |
80-249 |
1.85e-62 |
|
Respiratory-chain NADH dehydrogenase 51 Kd subunit;
Pssm-ID: 460237 [Multi-domain] Cd Length: 150 Bit Score: 199.66 E-value: 1.85e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20149568 80 IKTSGLRGRGGAGFPTGLKWSFmnkPSDGRPKYLVVNADEGEPGTCKDREILRHDPHKLLEGCLVGGRAMGARAAYIYIR 159
Cdd:pfam01512 1 VKEAGIVGRGGAGFPTHVKLSP---PPKKKIKYLIVNGAECEPGLTKDRRLMRERPHEIIEGIKIAAYALGAKRGVIGIR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20149568 160 GEFYNEASNLQVAIREAYEAGligknacgsgydFDVFVVRGAGAYICGEETALIESIEGKqGKPRLKPpfPADVGVfgcp 239
Cdd:pfam01512 78 DEKPEAIAALEKAIAEARAAG------------FDIEVHRGAGAYPCGEEKALIYSLTGR-GVPRGKP--PADVGV---- 138
|
170
....*....|
gi 20149568 240 tTVANVETVA 249
Cdd:pfam01512 139 -VVNNVETLA 147
|
|
| NADH_4Fe-4S |
pfam10589 |
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; |
365-449 |
5.33e-42 |
|
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region;
Pssm-ID: 463160 [Multi-domain] Cd Length: 85 Bit Score: 143.77 E-value: 5.33e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20149568 365 KAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRP 444
Cdd:pfam10589 1 DVARRFLEFYAHESCGKCTPCREGTKWLAEILERIVDGEGTEEDLDLLEELARTIKGRSLCGLGDGAANPVLSALRYFRD 80
|
....*
gi 20149568 445 ELEER 449
Cdd:pfam10589 81 EFEAH 85
|
|
| NADH_4Fe-4S |
smart00928 |
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; |
364-409 |
4.90e-20 |
|
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region;
Pssm-ID: 197996 [Multi-domain] Cd Length: 46 Bit Score: 82.96 E-value: 4.90e-20
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 20149568 364 VKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDARPAEI 409
Cdd:smart00928 1 VDAARRLMEFYAHESCGKCTPCREGTGWLLEILDRIEEGEGTEEDL 46
|
|
| RnfC |
COG4656 |
Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit [Energy production and ... |
73-321 |
7.91e-15 |
|
Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit [Energy production and conversion]; Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit is part of the Pathway/BioSystem: Na+-translocating Fd:NADH oxidoreductase
Pssm-ID: 443694 [Multi-domain] Cd Length: 451 Bit Score: 76.33 E-value: 7.91e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20149568 73 PDWILGEIKTSGLRGRGGAGFPTGLKwsfMNKPSDGRPKYLVVNADEGEPG-TCKDReILRHDPHKLLEGCLVGGRAMGA 151
Cdd:COG4656 121 PEEIIERIREAGIVGLGGAGFPTHVK---LSPPPDKKIDTLIINGAECEPYlTCDDR-LMRERAEEIIEGIRILMKALGA 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20149568 152 RAAYIyirgefyneasnlqvAI----REAYEAgLigKNACGSGYDFDVFVVR---GAGAyicgeETALIESIEGKQ---G 221
Cdd:COG4656 197 KKVII---------------GIednkPEAIAA-L--RKALAGDDDIEVVVLPtkyPQGG-----EKQLIKALTGREvpsG 253
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20149568 222 KprlkppFPADVGVFgcpttVANVETV-AVSPTICrrggtwfagFGR---ERnsgtkLFNISGH-VNHPCTVEEEMSVPL 296
Cdd:COG4656 254 G------LPADVGVV-----VQNVGTAyAIYRAVR---------DGKpliER-----VVTVTGDaVKEPGNLLVRIGTPV 308
|
250 260
....*....|....*....|....*
gi 20149568 297 KELIEkHAGGVTggwDNLLAVIPGG 321
Cdd:COG4656 309 SDLLE-QAGGFK---EEPGKLIMGG 329
|
|
| rnfC |
TIGR01945 |
electron transport complex, RnfABCDGE type, C subunit; The six subunit complex RnfABCDGE in ... |
69-321 |
1.95e-12 |
|
electron transport complex, RnfABCDGE type, C subunit; The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit. [Energy metabolism, Electron transport]
Pssm-ID: 273888 [Multi-domain] Cd Length: 435 Bit Score: 68.91 E-value: 1.95e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20149568 69 LLKGPDW-------ILGEIKTSGLRGRGGAGFPTGLKwsfMNKPSDGRPKYLVVNADEGEPG-TCKDReILRHDPHKLLE 140
Cdd:TIGR01945 110 LEPIPDFenlspeeILEKIRAAGIVGLGGATFPTHVK---LNPPPEKKIETLIINGAECEPYlTCDDR-LMRERAEEIIG 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20149568 141 GCLVGGRAMGARAAYIYIrgefynEASNLqvairEAYEAgliGKNACGsGYDFDVFVVRgaGAYICGEETALIESIEGKQ 220
Cdd:TIGR01945 186 GIRILLKILGVKKVVIGI------EDNKP-----EAIAA---LKKALG-GYNIKVRVLP--TKYPQGGEKQLIYALTGRE 248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20149568 221 GKPRlkpPFPADVGVfgcptTVANVETV-----AV---SPTIcRRGGTwfagfgrernsgtklfnISGH-VNHPCTVEEE 291
Cdd:TIGR01945 249 VPSG---GLPADIGV-----VVQNVGTAfaiyeAVvngKPLI-ERVVT-----------------VTGDaIRRPKNLWVL 302
|
250 260 270
....*....|....*....|....*....|
gi 20149568 292 MSVPLKELIEkHAGGVTggwDNLLAVIPGG 321
Cdd:TIGR01945 303 IGTPVSDILA-FCGGFR---EKPERLIMGG 328
|
|
| PRK05035 |
PRK05035 |
electron transport complex protein RnfC; Provisional |
73-141 |
1.14e-05 |
|
electron transport complex protein RnfC; Provisional
Pssm-ID: 235334 [Multi-domain] Cd Length: 695 Bit Score: 48.02 E-value: 1.14e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20149568 73 PDWILGEIKTSGLRGRGGAGFPTGLKWSfmnkPSDGRPKYLVVNADEGEPG-TCKDReILRHDPHKLLEG 141
Cdd:PRK05035 127 PEELIERIRQAGIAGLGGAGFPTAVKLQ----PGGDKIETLIINGAECEPYiTADDR-LMRERADEIIEG 191
|
|
| SLBB |
pfam10531 |
SLBB domain; |
278-325 |
3.03e-03 |
|
SLBB domain;
Pssm-ID: 463136 [Multi-domain] Cd Length: 56 Bit Score: 35.72 E-value: 3.03e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 20149568 278 ISGHVNHPCTVEEEMSVPLKELIEkHAGGVTGGWDNLLAVI----PGGSSTP 325
Cdd:pfam10531 4 VTGEVKRPGNYEVPIGTTLSDLIE-LAGGFTDDADLDINLRrlkrPGGPMMG 54
|
|
| |
