NCBI Conserved Domain Search

Conserved domains on [gi|19923855|ref|NP_116185|]

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synapse-associated protein 1 [Homo sapiens]

Protein Classification

BSD domain-containing protein( domain architecture ID 10654557)

BSD domain-containing protein similar to Homo sapiens BSD domain-containing protein 1 and synapse-associated protein 1

CATH: 1.10.3970.10

PubMed: 11943536

SCOP: 4001198

Graphical summary

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List of domain hits

Name

Accession

Description

Interval

E-value

BSD

smart00751

domain in transcription factors and synapse-associated proteins;

160-210

1.40e-11

domain in transcription factors and synapse-associated proteins;

Pssm-ID: 128990 [Multi-domain] Cd Length: 51 Bit Score: 58.74 E-value: 1.40e-11

                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 19923855    160 FNFDFDQMYPVALVMLQEDELLSKMRFALVPKLVKEEVFWRNYFYRVSLIK 210
Cdd:smart00751   1 NSFSLDAKKEEIESLLKENPLLKKLYNELVPKVLSEEEFWARYFYLLYKIK 51

Name

Accession

Description

Interval

E-value

BSD

smart00751

domain in transcription factors and synapse-associated proteins;

160-210

1.40e-11

domain in transcription factors and synapse-associated proteins;

Pssm-ID: 128990 [Multi-domain] Cd Length: 51 Bit Score: 58.74 E-value: 1.40e-11

                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 19923855    160 FNFDFDQMYPVALVMLQEDELLSKMRFALVPKLVKEEVFWRNYFYRVSLIK 210
Cdd:smart00751   1 NSFSLDAKKEEIESLLKENPLLKKLYNELVPKVLSEEEFWARYFYLLYKIK 51

BSD

pfam03909

BSD domain; This domain contains a distinctive -FW- motif. It is found in a family of ...

159-212

2.13e-10

BSD domain; This domain contains a distinctive -FW- motif. It is found in a family of eukaryotic transcription factors as well as a set of proteins of unknown function.

Pssm-ID: 461089 Cd Length: 55 Bit Score: 55.59 E-value: 2.13e-10

                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 19923855   159 QFNFDfDQMYPVALVMLQEDELLSKMRFALVPKLVKEEVFWRNYFYRVSLIKQS 212
Cdd:pfam03909   1 GFKLD-EKTEEIAQLLLKEDPELRKLYEELVPSKVSEEEFWSRYFYLLRALKQE 53

Name

Accession

Description

Interval

E-value

BSD

smart00751

domain in transcription factors and synapse-associated proteins;

160-210

1.40e-11

domain in transcription factors and synapse-associated proteins;

Pssm-ID: 128990 [Multi-domain] Cd Length: 51 Bit Score: 58.74 E-value: 1.40e-11

                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 19923855    160 FNFDFDQMYPVALVMLQEDELLSKMRFALVPKLVKEEVFWRNYFYRVSLIK 210
Cdd:smart00751   1 NSFSLDAKKEEIESLLKENPLLKKLYNELVPKVLSEEEFWARYFYLLYKIK 51

BSD

pfam03909

BSD domain; This domain contains a distinctive -FW- motif. It is found in a family of ...

159-212

2.13e-10

BSD domain; This domain contains a distinctive -FW- motif. It is found in a family of eukaryotic transcription factors as well as a set of proteins of unknown function.

Pssm-ID: 461089 Cd Length: 55 Bit Score: 55.59 E-value: 2.13e-10

                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 19923855   159 QFNFDfDQMYPVALVMLQEDELLSKMRFALVPKLVKEEVFWRNYFYRVSLIKQS 212
Cdd:pfam03909   1 GFKLD-EKTEEIAQLLLKEDPELRKLYEELVPSKVSEEEFWSRYFYLLRALKQE 53

Blast search parameters

Data Source:	Precalculated data, version = cdd.v.3.21
Preset Options:	Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01