NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|530371012|ref|XP_005246936|]
View 

endoplasmic reticulum junction formation protein lunapark isoform X3 [Homo sapiens]

Protein Classification

lunapark family zinc ribbon domain-containing protein( domain architecture ID 10562191)

lunapark family zinc ribbon domain-containing protein similar to endoplasmic reticulum junction formation protein lunapark, which is an endoplasmic reticulum (ER)-shaping membrane protein that plays a role in determining ER morphology

Gene Ontology:  GO:0046872|GO:0071786
PubMed:  32851833
TCDB:  8.A.109

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
zinc_ribbon_10 pfam10058
Predicted integral membrane zinc-ribbon metal-binding protein; This domain, found in various ...
 180-230 4.50e-25

Predicted integral membrane zinc-ribbon metal-binding protein; This domain, found in various hypothetical bacterial and eukaryotic metal-binding proteins is a probably zinc-ribbon.


:

Pssm-ID: 401882 [Multi-domain]  Cd Length: 51  Bit Score: 95.78  E-value: 4.50e-25
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 530371012  180 ALDRIVEYLVGDGPQNRYALICQQCFSHNGMALKEEFEYIAFRCAYCFFLN 230
Cdd:pfam10058   1 WFDRVLDYLVGDDPKNRYALICSKCRSHNGLAPKEEYEYVTYRCPNCGALN 51
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 75-176 7.45e-05

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.93  E-value: 7.45e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530371012   75 EPPSAGAAVTARpgqeirqrtAAQRNLSPTPASPNQGPPPQVPVSPGPPKDSSAPGGPPERTVTPAlsSNVLPRHLGSPA 154
Cdd:PHA03247 2803 DPADPPAAVLAP---------AAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPG--GDVRRRPPSRSP 2871

                          90       100
                  ....*....|....*....|..
gi 530371012  155 TSVPGMGLHPPGPPLARPILPR 176
Cdd:PHA03247 2872 AAKPAAPARPPVRRLARPAVSR 2893
 
Name Accession Description Interval E-value
zinc_ribbon_10 pfam10058
Predicted integral membrane zinc-ribbon metal-binding protein; This domain, found in various ...
 180-230 4.50e-25

Predicted integral membrane zinc-ribbon metal-binding protein; This domain, found in various hypothetical bacterial and eukaryotic metal-binding proteins is a probably zinc-ribbon.


Pssm-ID: 401882 [Multi-domain]  Cd Length: 51  Bit Score: 95.78  E-value: 4.50e-25
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 530371012  180 ALDRIVEYLVGDGPQNRYALICQQCFSHNGMALKEEFEYIAFRCAYCFFLN 230
Cdd:pfam10058   1 WFDRVLDYLVGDDPKNRYALICSKCRSHNGLAPKEEYEYVTYRCPNCGALN 51
COG5415 COG5415
Predicted integral membrane metal-binding protein [General function prediction only];
7-236 5.57e-09

Predicted integral membrane metal-binding protein [General function prediction only];


Pssm-ID: 227702 [Multi-domain]  Cd Length: 251  Bit Score: 56.15  E-value: 5.57e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530371012   7 AFPLIIWSI---RTVIIFFFSKRTERNNEALDDLKSQRKKILEEVMEKETYKTAKLILERFDpdskkakeceppsagaav 83
Cdd:COG5415   75 ALLLGSGSLymfRWALTKLYEFRNNRRLRKLAKLRAIHRKKLEKLKEETHYNATSSIIQKYS------------------ 136

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530371012  84 tarpgqeiRQRTAAQRNLSPTPAspnqgpppqvpvspgppkdssapggppertvtpalssnvlprhlgspATSVPGMGLH 163
Cdd:COG5415  137 --------EELNAKYQELNNLKT-----------------------------------------------EKEKFKKESH 161

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 530371012 164 PPGPPlarpilpRERGALDRIVEYLVGDGPQ---NRYALICQQCFSHNGMALKEEFEYIAFRCAYCFFLNPARKTR 236
Cdd:COG5415  162 VKKKE-------DSDAWFDKVISVLAGGNELdlsPFKALICPQCHHHNGLYRLAEKPIIEFICPHCNHKNDEVKER 230
PHA03247 PHA03247
large tegument protein UL36; Provisional
 75-176 7.45e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.93  E-value: 7.45e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530371012   75 EPPSAGAAVTARpgqeirqrtAAQRNLSPTPASPNQGPPPQVPVSPGPPKDSSAPGGPPERTVTPAlsSNVLPRHLGSPA 154
Cdd:PHA03247 2803 DPADPPAAVLAP---------AAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPG--GDVRRRPPSRSP 2871

                          90       100
                  ....*....|....*....|..
gi 530371012  155 TSVPGMGLHPPGPPLARPILPR 176
Cdd:PHA03247 2872 AAKPAAPARPPVRRLARPAVSR 2893
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 91-182 2.80e-03

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 39.60  E-value: 2.80e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530371012  91 IRQRTAAQRNLSPTPASPNQGPPPQVPVSPG-PPKDSSAPGGPPERTVTPALSSNVLPRHLGSPATSVPGMGLHP----P 165
Cdd:NF041121  15 MGRAAAPPSPEGPAPTAASQPATPPPPAAPPsPPGDPPEPPAPEPAPLPAPYPGSLAPPPPPPPGPAGAAPGAALpvrvP 94

                         90       100       110
                 ....*....|....*....|....*....|.
gi 530371012 166 GP--------------PLARPILPRERGALD 182
Cdd:NF041121  95 APpalpnplelaralrPLKRRVPSPRRVELD 125
 
Name Accession Description Interval E-value
zinc_ribbon_10 pfam10058
Predicted integral membrane zinc-ribbon metal-binding protein; This domain, found in various ...
 180-230 4.50e-25

Predicted integral membrane zinc-ribbon metal-binding protein; This domain, found in various hypothetical bacterial and eukaryotic metal-binding proteins is a probably zinc-ribbon.


Pssm-ID: 401882 [Multi-domain]  Cd Length: 51  Bit Score: 95.78  E-value: 4.50e-25
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 530371012  180 ALDRIVEYLVGDGPQNRYALICQQCFSHNGMALKEEFEYIAFRCAYCFFLN 230
Cdd:pfam10058   1 WFDRVLDYLVGDDPKNRYALICSKCRSHNGLAPKEEYEYVTYRCPNCGALN 51
COG5415 COG5415
Predicted integral membrane metal-binding protein [General function prediction only];
7-236 5.57e-09

Predicted integral membrane metal-binding protein [General function prediction only];


Pssm-ID: 227702 [Multi-domain]  Cd Length: 251  Bit Score: 56.15  E-value: 5.57e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530371012   7 AFPLIIWSI---RTVIIFFFSKRTERNNEALDDLKSQRKKILEEVMEKETYKTAKLILERFDpdskkakeceppsagaav 83
Cdd:COG5415   75 ALLLGSGSLymfRWALTKLYEFRNNRRLRKLAKLRAIHRKKLEKLKEETHYNATSSIIQKYS------------------ 136

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530371012  84 tarpgqeiRQRTAAQRNLSPTPAspnqgpppqvpvspgppkdssapggppertvtpalssnvlprhlgspATSVPGMGLH 163
Cdd:COG5415  137 --------EELNAKYQELNNLKT-----------------------------------------------EKEKFKKESH 161

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 530371012 164 PPGPPlarpilpRERGALDRIVEYLVGDGPQ---NRYALICQQCFSHNGMALKEEFEYIAFRCAYCFFLNPARKTR 236
Cdd:COG5415  162 VKKKE-------DSDAWFDKVISVLAGGNELdlsPFKALICPQCHHHNGLYRLAEKPIIEFICPHCNHKNDEVKER 230
PHA03247 PHA03247
large tegument protein UL36; Provisional
 75-176 7.45e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.93  E-value: 7.45e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530371012   75 EPPSAGAAVTARpgqeirqrtAAQRNLSPTPASPNQGPPPQVPVSPGPPKDSSAPGGPPERTVTPAlsSNVLPRHLGSPA 154
Cdd:PHA03247 2803 DPADPPAAVLAP---------AAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPG--GDVRRRPPSRSP 2871

                          90       100
                  ....*....|....*....|..
gi 530371012  155 TSVPGMGLHPPGPPLARPILPR 176
Cdd:PHA03247 2872 AAKPAAPARPPVRRLARPAVSR 2893
PHA03247 PHA03247
large tegument protein UL36; Provisional
 76-175 8.42e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.54  E-value: 8.42e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530371012   76 PPSAGAAVTARPGQEIRQRTAAQRNLSPTPASPNQGPPPQVPVSPGPPKDSSAPGGPPERTVTPAlSSNVLPRHLGSPAT 155
Cdd:PHA03247 2743 AVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADP-PAAVLAPAAALPPA 2821

                          90       100
                  ....*....|....*....|....*.
gi 530371012  156 SVPGMGLHPP------GPPLARPILP 175
Cdd:PHA03247 2822 ASPAGPLPPPtsaqptAPPPPPGPPP 2847
PHA03247 PHA03247
large tegument protein UL36; Provisional
 76-175 1.29e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.16  E-value: 1.29e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530371012   76 PPSAGAAVTARPGQEIRQRTAAQRNLSPTPASPNQGPPPQVPVSPGPPKDSSAPGGPPERTVTP------ALSSNVLPRH 149
Cdd:PHA03247 2722 PPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRpavaslSESRESLPSP 2801

                          90       100
                  ....*....|....*....|....*.
gi 530371012  150 LGSPATSVPGMGLHPPGPPLARPILP 175
Cdd:PHA03247 2802 WDPADPPAAVLAPAAALPPAASPAGP 2827
PRK14959 PRK14959
DNA polymerase III subunits gamma and tau; Provisional
 76-209 5.37e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184923 [Multi-domain]  Cd Length: 624  Bit Score: 41.97  E-value: 5.37e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530371012  76 PPSAGAAVTARPGQEIRQRTAAQRNLSPTPA-----SPNQGPPPQVP---VSPGPPKDSSAPGGPPErtVTPALSSNVLP 147
Cdd:PRK14959 389 PASGGAATIPTPGTQGPQGTAPAAGMTPSSAapatpAPSAAPSPRVPwddAPPAPPRSGIPPRPAPR--MPEASPVPGAP 466

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 530371012 148 RHLGSPATSVPGMGlHPPGPPLARPILPRergALDRIVEYLVG-DGPQNRYALICQQCFSHNG 209
Cdd:PRK14959 467 DSVASASDAPPTLG-DPSDTAEHTPSGPR---TWDGFLEFCQGrNGQGGRLATVLRQATPEHA 525
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 76-191 7.42e-04

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 41.61  E-value: 7.42e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530371012   76 PPSAGAAVTARPGQEIRQRTAAQRNLSPTPaspnQGPPPQVPVSPGP----PKDSSAPGgPPERTVTPALSSNVLPRHLG 151
Cdd:PRK10263  786 APQPQYQQPQQPVAPQPQYQQPQQPVAPQP----QYQQPQQPVAPQPqyqqPQQPVAPQ-PQDTLLHPLLMRNGDSRPLH 860

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 530371012  152 SPATSVPGMGLHPPGPPLARPILPRERGALDRIVEYLVGD 191
Cdd:PRK10263  861 KPTTPLPSLDLLTPPPSEVEPVDTFALEQMARLVEARLAD 900
PRK13729 PRK13729
conjugal transfer pilus assembly protein TraB; Provisional
 85-173 1.35e-03

conjugal transfer pilus assembly protein TraB; Provisional


Pssm-ID: 184281 [Multi-domain]  Cd Length: 475  Bit Score: 40.58  E-value: 1.35e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530371012  85 ARPGQEIRQRTAAQRNLSPTPASPNQGPPPQVPVSPGPPKDSSAPGG-----PPERTVTPAlssnvlprhlgSPATSVPG 159
Cdd:PRK13729 107 EKLGQDNAALAEQVKALGANPVTATGEPVPQMPASPPGPEGEPQPGNtpvsfPPQGSVAVP-----------PPTAFYPG 175

                         90
                 ....*....|....
gi 530371012 160 MGLHPPGPPLARPI 173
Cdd:PRK13729 176 NGVTPPPQVTYQSV 189
PHA03247 PHA03247
large tegument protein UL36; Provisional
 76-175 1.96e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 40.31  E-value: 1.96e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530371012   76 PPSAGAAVTARPGQEIRQRTAAQRNLSPTPASPNQGP-PPQVPVSPGPPKDSSAPGGPPerTVTPALSSNVLPRHLGSPA 154
Cdd:PHA03247 2813 APAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSlPLGGSVAPGGDVRRRPPSRSP--AAKPAAPARPPVRRLARPA 2890

                          90       100
                  ....*....|....*....|.
gi 530371012  155 TSVPGMGLHPPGPPLARPILP 175
Cdd:PHA03247 2891 VSRSTESFALPPDQPERPPQP 2911
PHA03247 PHA03247
large tegument protein UL36; Provisional
 76-175 2.58e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 39.92  E-value: 2.58e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530371012   76 PPSAGAAVTARPGQEIRQRTAAQRNLSPTPASPNQGP-PPQVPVSPGPPKDSS---APGGPPERTVTPALSSNVLPRHLG 151
Cdd:PHA03247 2647 PPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPrRRAARPTVGSLTSLAdppPPPPTPEPAPHALVSATPLPPGPA 2726

                          90       100
                  ....*....|....*....|....*
gi 530371012  152 SPATSVPGMGLHP-PGPPLARPILP 175
Cdd:PHA03247 2727 AARQASPALPAAPaPPAVPAGPATP 2751
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 91-182 2.80e-03

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 39.60  E-value: 2.80e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530371012  91 IRQRTAAQRNLSPTPASPNQGPPPQVPVSPG-PPKDSSAPGGPPERTVTPALSSNVLPRHLGSPATSVPGMGLHP----P 165
Cdd:NF041121  15 MGRAAAPPSPEGPAPTAASQPATPPPPAAPPsPPGDPPEPPAPEPAPLPAPYPGSLAPPPPPPPGPAGAAPGAALpvrvP 94

                         90       100       110
                 ....*....|....*....|....*....|.
gi 530371012 166 GP--------------PLARPILPRERGALD 182
Cdd:NF041121  95 APpalpnplelaralrPLKRRVPSPRRVELD 125
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
76-190 3.85e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 38.99  E-value: 3.85e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530371012  76 PPSAGAAVTARPGQEIRQRTAAQrnlsPTPASPNQGPPPQVPVSPGPPKDSSAPGGPPERtVTPALSSNVLPrhlgspat 155
Cdd:PRK14971 391 QPSAAAAASPSPSQSSAAAQPSA----PQSATQPAGTPPTVSVDPPAAVPVNPPSTAPQA-VRPAQFKEEKK-------- 457

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 530371012 156 sVPGMGLHPPGPPLARPILPRERGALDRIVEYLVG 190
Cdd:PRK14971 458 -IPVSKVSSLGPSTLRPIQEKAEQATGNIKEAPTG 491
PHA03247 PHA03247
large tegument protein UL36; Provisional
 76-171 4.16e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 39.15  E-value: 4.16e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530371012   76 PPSAGAAVTARPGQEIRQRTAAQRNLSPTPASPNQGPPPQVPVSPGPPKDSSAPGGPPERtvTPALSSNVLPRHLGSPAT 155
Cdd:PHA03247 2870 SPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQP--QPPPPPPPRPQPPLAPTT 2947

                          90
                  ....*....|....*.
gi 530371012  156 SVPGMGLHPPGPPLAR 171
Cdd:PHA03247 2948 DPAGAGEPSGAVPQPW 2963
PHA03378 PHA03378
EBNA-3B; Provisional
 77-196 4.43e-03

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 38.89  E-value: 4.43e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530371012  77 PSAGAAVTARPgqeirqRTAAQRNLSPTPASPNQGPPPQVPVSPG-PPKDSSAPGGPPERTVTPALSSNVLPRHLGSPAT 155
Cdd:PHA03378 676 PSPTGANTMLP------IQWAPGTMQPPPRAPTPMRPPAAPPGRAqRPAAATGRARPPAAAPGRARPPAAAPGRARPPAA 749

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 530371012 156 SvPGMGLHPPGPPLARPILPRERGALDRIVEYLVGDGPQNR 196
Cdd:PHA03378 750 A-PGRARPPAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQR 789
PHA03247 PHA03247
large tegument protein UL36; Provisional
 73-180 4.46e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 39.15  E-value: 4.46e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530371012   73 ECEPPSAGAAVTAR------PGQEIRQRT-AAQRNLSPTPASPNQGPPPQVPVSPGPPKDSSAPGGPPERTVTPALSSNV 145
Cdd:PHA03247 2572 RPAPRPSEPAVTSRarrpdaPPQSARPRApVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPER 2651

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 530371012  146 LPRHLGSPATSVPGMGLHPPGPPLAR--PILPRERGA 180
Cdd:PHA03247 2652 PRDDPAPGRVSRPRRARRLGRAAQASspPQRPRRRAA 2688
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 67-176 9.55e-03

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 38.13  E-value: 9.55e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530371012  67 DSKKAKECEPP--SAGAAVTARPGQEIRQRTAAQRNLSPTPASPNQGPPPQVPVSPGPPKDSSAPGGPPERTVTPALSSN 144
Cdd:PTZ00449 539 ESDEPKEGGKPgeTKEGEVGKKPGPAKEHKPSKIPTLSKKPEFPKDPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPELL 618

                         90       100       110
                 ....*....|....*....|....*....|..
gi 530371012 145 VLPRHLGSPATsvPGMGLHPPGPplARPILPR 176
Cdd:PTZ00449 619 DIPKSPKRPES--PKSPKRPPPP--QRPSSPE 646
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH