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Conserved domains on  [gi|530374430|ref|XP_005247421|]
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Golgi integral membrane protein 4 isoform X1 [Homo sapiens]

Protein Classification

coiled-coil domain-containing protein( domain architecture ID 1000037)

coiled-coil domain-containing protein contains a region with alpha-helical coiled-coil sequence signatures that is being annotated by a variety of protein family models, not necessarily indicating family membership

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
Smc super family cl34174
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 35-568 1.88e-07

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


The actual alignment was detected with superfamily member COG1196:

Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 54.56  E-value: 1.88e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430  35 ELQTQLRKAEA----VALKYQQHQESLSAQLQVVYEHRSRLEKSLQKERLEHKKAK--EDFLVYKLEAQETLNKGRQDSN 108
Cdd:COG1196  257 ELEAELAELEAeleeLRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRelEERLEELEEELAELEEELEELE 336

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430 109 SRYSALNVQHQMLKSQHEELKKQHSDLEE---EHRKQGEDFSRTFNDHKQKYLQLQQEKEQELSKLKE---TVYNLREEN 182
Cdd:COG1196  337 EELEELEEELEEAEEELEEAEAELAEAEEallEAEAELAEAEEELEELAEELLEALRAAAELAAQLEEleeAEEALLERL 416

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430 183 RQLRKAHQDIHTQLQDVKQQHKNLLSEHEQLVVTLEDHKSALAAAQTQVAEYKQLKDTLNRIPSLRKPDPAEQQNVTQVA 262
Cdd:COG1196  417 ERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLL 496

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430 263 HSPQGYNTAREKPTREVQEVSRNNDVWQNHEAVPGRAEDTKLYAPTHKEAEFQAPPEPIQQEVERREPEEHQVEEEHRKA 342
Cdd:COG1196  497 LEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATF 576

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430 343 LEEEEMEQ----VGQAEHLEEEHDPSPEEQDREWKEQHEQREAANLLEGHARAEVYPSAkpmIKFQSPYEEQLEQQRLAV 418
Cdd:COG1196  577 LPLDKIRAraalAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAA---LRRAVTLAGRLREVTLEG 653

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430 419 QQVEEAQQLREHQEALHQQRLQGHLLRQQEQQQQQVAREMALQRQAELEEGRPQHQEQLRQQAHYDAMDNDIVQGAEDQG 498
Cdd:COG1196  654 EGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAE 733

                        490       500       510       520       530       540       550
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 530374430 499 IQgeeggayERDNQHQDEAEGDPGNRHEPREQGPREADPESEADR-----AAVEDINPAddpnnqGEDEFEEAEQ 568
Cdd:COG1196  734 RE-------ELLEELLEEEELLEEEALEELPEPPDLEELERELERlereiEALGPVNLL------AIEEYEELEE 795
 
Name Accession Description Interval E-value
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 35-568 1.88e-07

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 54.56  E-value: 1.88e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430  35 ELQTQLRKAEA----VALKYQQHQESLSAQLQVVYEHRSRLEKSLQKERLEHKKAK--EDFLVYKLEAQETLNKGRQDSN 108
Cdd:COG1196  257 ELEAELAELEAeleeLRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRelEERLEELEEELAELEEELEELE 336

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430 109 SRYSALNVQHQMLKSQHEELKKQHSDLEE---EHRKQGEDFSRTFNDHKQKYLQLQQEKEQELSKLKE---TVYNLREEN 182
Cdd:COG1196  337 EELEELEEELEEAEEELEEAEAELAEAEEallEAEAELAEAEEELEELAEELLEALRAAAELAAQLEEleeAEEALLERL 416

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430 183 RQLRKAHQDIHTQLQDVKQQHKNLLSEHEQLVVTLEDHKSALAAAQTQVAEYKQLKDTLNRIPSLRKPDPAEQQNVTQVA 262
Cdd:COG1196  417 ERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLL 496

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430 263 HSPQGYNTAREKPTREVQEVSRNNDVWQNHEAVPGRAEDTKLYAPTHKEAEFQAPPEPIQQEVERREPEEHQVEEEHRKA 342
Cdd:COG1196  497 LEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATF 576

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430 343 LEEEEMEQ----VGQAEHLEEEHDPSPEEQDREWKEQHEQREAANLLEGHARAEVYPSAkpmIKFQSPYEEQLEQQRLAV 418
Cdd:COG1196  577 LPLDKIRAraalAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAA---LRRAVTLAGRLREVTLEG 653

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430 419 QQVEEAQQLREHQEALHQQRLQGHLLRQQEQQQQQVAREMALQRQAELEEGRPQHQEQLRQQAHYDAMDNDIVQGAEDQG 498
Cdd:COG1196  654 EGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAE 733

                        490       500       510       520       530       540       550
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 530374430 499 IQgeeggayERDNQHQDEAEGDPGNRHEPREQGPREADPESEADR-----AAVEDINPAddpnnqGEDEFEEAEQ 568
Cdd:COG1196  734 RE-------ELLEELLEEEELLEEEALEELPEPPDLEELERELERlereiEALGPVNLL------AIEEYEELEE 795
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 457-655 4.83e-06

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 49.99  E-value: 4.83e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430   457 EMALQRQAELEEGRPQHQEQLRQQAHYDAMDndiVQGAEDQG-IQGEEGGAYERDnQHQDEAEGDP-----GNRHEPREQ 530
Cdd:TIGR00927  692 EQEGEGEIEAKEADHKGETEAEEVEHEGETE---AEGTEDEGeIETGEEGEEVED-EGEGEAEGKHeveteGDRKETEHE 767

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430   531 GPREADPESEADRAAVEDINPADDPNNQGEDEFEEAEQVREENLPDENEEQKQSNQKQENTEVEEHLVMAGNPDQQEDNV 610
Cdd:TIGR00927  768 GETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQ 847

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*
gi 530374430   611 DEQYQEEAEEEVQEDLTEEKKRELEHNAEETYGENDENTDDKNND 655
Cdd:TIGR00927  848 DEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEE 892
PTZ00121 PTZ00121
MAEBL; Provisional
 35-593 8.77e-06

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 49.37  E-value: 8.77e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430   35 ELQTQLRKAEAVALKYQQHQESLSAQLQVVYEHRSRLEKSLQKERLEHKKAKEdfLVYKLEAQETLNKGRQDSNSRYSAl 114
Cdd:PTZ00121 1370 EKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADE--AKKKAEEKKKADEAKKKAEEAKKA- 1446

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430  115 nvqhqmlksqhEELKKQhsdlEEEHRKQGEDFSRTFNDHKQKYLQLQQEKEQELSKLKETVYNLREENRQLRKAHQDIHT 194
Cdd:PTZ00121 1447 -----------DEAKKK----AEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKK 1511

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430  195 QLQDVKQQHKNLLSEheqlvvtLEDHKSALAAAQTQVAEYKQLKDTLNRIPSLRKPDPAEQQNVTQVAHSPQGYNTAREK 274
Cdd:PTZ00121 1512 ADEAKKAEEAKKADE-------AKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAE 1584

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430  275 PTREVQEVSRNNDVWQNHEAVPGRAEDTKLYAPTHKEAEFQAPPEPIQQEVERREPEEHQVEEEHRKALEEEEMEQVGQA 354
Cdd:PTZ00121 1585 EAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAA 1664

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430  355 E--HLEEEHDPSPEEQDREWKEQHEQREAANLLEGHARA--EVYPSAKPMIKFQSPYEEQLEQQRLAVQQVE-EAQQLRE 429
Cdd:PTZ00121 1665 EeaKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKaeELKKKEAEEKKKAEELKKAEEENKIKAEEAKkEAEEDKK 1744

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430  430 HQEALHQQRLQGHLLRQQEQQQQQVAREMALQRQAELEEGRPQHQEQLRQQAhyDAMDNDIVQGAEDQGIQGEEGGAYER 509
Cdd:PTZ00121 1745 KAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEV--DKKIKDIFDNFANIIEGGKEGNLVIN 1822

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430  510 DNQHQDEAE--------GDPGNRHEPREQGPREADPESEADRAAVEDINPADDPNNQGEDEFEEAEQVREENLPDENEEQ 581
Cdd:PTZ00121 1823 DSKEMEDSAikevadskNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADEIEKIDKDDIEREI 1902

                         570
                  ....*....|..
gi 530374430  582 KQSNQKQENTEV 593
Cdd:PTZ00121 1903 PNNNMAGKNNDI 1914
 
Name Accession Description Interval E-value
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 35-568 1.88e-07

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 54.56  E-value: 1.88e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430  35 ELQTQLRKAEA----VALKYQQHQESLSAQLQVVYEHRSRLEKSLQKERLEHKKAK--EDFLVYKLEAQETLNKGRQDSN 108
Cdd:COG1196  257 ELEAELAELEAeleeLRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRelEERLEELEEELAELEEELEELE 336

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430 109 SRYSALNVQHQMLKSQHEELKKQHSDLEE---EHRKQGEDFSRTFNDHKQKYLQLQQEKEQELSKLKE---TVYNLREEN 182
Cdd:COG1196  337 EELEELEEELEEAEEELEEAEAELAEAEEallEAEAELAEAEEELEELAEELLEALRAAAELAAQLEEleeAEEALLERL 416

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430 183 RQLRKAHQDIHTQLQDVKQQHKNLLSEHEQLVVTLEDHKSALAAAQTQVAEYKQLKDTLNRIPSLRKPDPAEQQNVTQVA 262
Cdd:COG1196  417 ERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLL 496

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430 263 HSPQGYNTAREKPTREVQEVSRNNDVWQNHEAVPGRAEDTKLYAPTHKEAEFQAPPEPIQQEVERREPEEHQVEEEHRKA 342
Cdd:COG1196  497 LEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATF 576

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430 343 LEEEEMEQ----VGQAEHLEEEHDPSPEEQDREWKEQHEQREAANLLEGHARAEVYPSAkpmIKFQSPYEEQLEQQRLAV 418
Cdd:COG1196  577 LPLDKIRAraalAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAA---LRRAVTLAGRLREVTLEG 653

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430 419 QQVEEAQQLREHQEALHQQRLQGHLLRQQEQQQQQVAREMALQRQAELEEGRPQHQEQLRQQAHYDAMDNDIVQGAEDQG 498
Cdd:COG1196  654 EGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAE 733

                        490       500       510       520       530       540       550
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 530374430 499 IQgeeggayERDNQHQDEAEGDPGNRHEPREQGPREADPESEADR-----AAVEDINPAddpnnqGEDEFEEAEQ 568
Cdd:COG1196  734 RE-------ELLEELLEEEELLEEEALEELPEPPDLEELERELERlereiEALGPVNLL------AIEEYEELEE 795
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 30-581 3.70e-07

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 53.79  E-value: 3.70e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430  30 AMLYYELQTQL--RKAEAVALKYQQHQ----------ESLSAQLQVVYEHRSRLEKSLQKERLEHKKAKEDFL-----VY 92
Cdd:COG1196  212 AERYRELKEELkeLEAELLLLKLRELEaeleeleaelEELEAELEELEAELAELEAELEELRLELEELELELEeaqaeEY 291

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430  93 KLEAQ-ETLNKGRQDSNSRYSALNVQHQMLKSQHEELKKQHSDLEEEHRKQGEDFSRTFNDHKQKyLQLQQEKEQELSKL 171
Cdd:COG1196  292 ELLAElARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEA-EAELAEAEEALLEA 370

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430 172 KETVYNLREENRQLRKAHQDIHTQLQDVKQQHKNLLSEHEQLVVTLEDHKSALAAAQTQVAEYKQLKDtlnripslrkpd 251
Cdd:COG1196  371 EAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEE------------ 438

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430 252 pAEQQNVTQVAHSPQGYNTAREKPTREVQEVSRNNDVWQNHEAVPGRAEDTK---LYAPTHKEAEFQAPPEPIQQEVERR 328
Cdd:COG1196  439 -EEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAaarLLLLLEAEADYEGFLEGVKAALLLA 517

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430 329 EPEEHQVEEEHRKALEEEEMEQVGQAEHLEEEHDPSPEEQDREWKEQHEQREAAnlleghARAEVYPSAKPMIKFQSPYE 408
Cdd:COG1196  518 GLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKA------GRATFLPLDKIRARAALAAA 591

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430 409 EQLEQQRLAVQQVEEAQQLREHQEALHQQRLQGHLLRQQEQQQQQVAREMALQRQAELEEGRPQHQEQLRQQAHYDAMDN 488
Cdd:COG1196  592 LARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELL 671

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430 489 DIVQGAEDQGIQGEEGGAYERDNQHQDEAEGDPGNRHEPREQGPREADPESEADRAAVEDINPADDPNNQGEDEFEEAEQ 568
Cdd:COG1196  672 AALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEE 751

                        570
                 ....*....|...
gi 530374430 569 VREENLPDENEEQ 581
Cdd:COG1196  752 ALEELPEPPDLEE 764
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 457-655 4.83e-06

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 49.99  E-value: 4.83e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430   457 EMALQRQAELEEGRPQHQEQLRQQAHYDAMDndiVQGAEDQG-IQGEEGGAYERDnQHQDEAEGDP-----GNRHEPREQ 530
Cdd:TIGR00927  692 EQEGEGEIEAKEADHKGETEAEEVEHEGETE---AEGTEDEGeIETGEEGEEVED-EGEGEAEGKHeveteGDRKETEHE 767

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430   531 GPREADPESEADRAAVEDINPADDPNNQGEDEFEEAEQVREENLPDENEEQKQSNQKQENTEVEEHLVMAGNPDQQEDNV 610
Cdd:TIGR00927  768 GETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQ 847

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*
gi 530374430   611 DEQYQEEAEEEVQEDLTEEKKRELEHNAEETYGENDENTDDKNND 655
Cdd:TIGR00927  848 DEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEE 892
PTZ00121 PTZ00121
MAEBL; Provisional
 35-593 8.77e-06

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 49.37  E-value: 8.77e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430   35 ELQTQLRKAEAVALKYQQHQESLSAQLQVVYEHRSRLEKSLQKERLEHKKAKEdfLVYKLEAQETLNKGRQDSNSRYSAl 114
Cdd:PTZ00121 1370 EKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADE--AKKKAEEKKKADEAKKKAEEAKKA- 1446

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430  115 nvqhqmlksqhEELKKQhsdlEEEHRKQGEDFSRTFNDHKQKYLQLQQEKEQELSKLKETVYNLREENRQLRKAHQDIHT 194
Cdd:PTZ00121 1447 -----------DEAKKK----AEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKK 1511

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430  195 QLQDVKQQHKNLLSEheqlvvtLEDHKSALAAAQTQVAEYKQLKDTLNRIPSLRKPDPAEQQNVTQVAHSPQGYNTAREK 274
Cdd:PTZ00121 1512 ADEAKKAEEAKKADE-------AKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAE 1584

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430  275 PTREVQEVSRNNDVWQNHEAVPGRAEDTKLYAPTHKEAEFQAPPEPIQQEVERREPEEHQVEEEHRKALEEEEMEQVGQA 354
Cdd:PTZ00121 1585 EAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAA 1664

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430  355 E--HLEEEHDPSPEEQDREWKEQHEQREAANLLEGHARA--EVYPSAKPMIKFQSPYEEQLEQQRLAVQQVE-EAQQLRE 429
Cdd:PTZ00121 1665 EeaKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKaeELKKKEAEEKKKAEELKKAEEENKIKAEEAKkEAEEDKK 1744

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430  430 HQEALHQQRLQGHLLRQQEQQQQQVAREMALQRQAELEEGRPQHQEQLRQQAhyDAMDNDIVQGAEDQGIQGEEGGAYER 509
Cdd:PTZ00121 1745 KAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEV--DKKIKDIFDNFANIIEGGKEGNLVIN 1822

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430  510 DNQHQDEAE--------GDPGNRHEPREQGPREADPESEADRAAVEDINPADDPNNQGEDEFEEAEQVREENLPDENEEQ 581
Cdd:PTZ00121 1823 DSKEMEDSAikevadskNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADEIEKIDKDDIEREI 1902

                         570
                  ....*....|..
gi 530374430  582 KQSNQKQENTEV 593
Cdd:PTZ00121 1903 PNNNMAGKNNDI 1914
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 34-236 1.63e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 48.51  E-value: 1.63e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430    34 YELQTQLRKAEAVALKYQQHQESLSAQLQVVYEHRSRLEKSLQK--ERLEHKKAKEDFLVYKLEAQETlnkgrqdsnsRY 111
Cdd:TIGR02168  277 SELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEEleAQLEELESKLDELAEELAELEE----------KL 346

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430   112 SALNVQHQMLKSQHEELKKQHSDLE---EEHRKQGEDFSRTFNDHKQKYLQLQ---QEKEQELSKLKETVYNLREENRQL 185
Cdd:TIGR02168  347 EELKEELESLEAELEELEAELEELEsrlEELEEQLETLRSKVAQLELQIASLNneiERLEARLERLEDRRERLQQEIEEL 426

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 530374430   186 RKAHQ-----DIHTQLQDVKQQHKNLLSEHEQLVVTLEDHKSALAAAQTQVAEYKQ 236
Cdd:TIGR02168  427 LKKLEeaelkELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAER 482
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 344-588 2.54e-05

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 47.68  E-value: 2.54e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430   344 EEEEMEQVGQAEHLEEEHDPSPEEQDREWKEQHEQ-------REAANLLEGHARAEVYPSAKPMIKFQSPYEEQLEQQRL 416
Cdd:TIGR00927  647 EEGERPTEAEGENGEESGGEAEQEGETETKGENESegeipaeRKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGT 726

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430   417 AVQQVEEAQQLREHQEALHQQRLQG--HLLRQQEQQQQQVAREMALQRQAELEEGRPQHQEQLRQQAHyDAMDNDIVQGA 494
Cdd:TIGR00927  727 EDEGEIETGEEGEEVEDEGEGEAEGkhEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGD-EGAEGKVEHEG 805

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430   495 EDQGIQGEEGGAYERDNQHQDEAEGDPGNR------HEPREQGPREADPESEADRAAVEDINPADDPNNQGEDEFEEAEQ 568
Cdd:TIGR00927  806 ETEAGEKDEHEGQSETQADDTEVKDETGEQelnaenQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEE 885

                          250       260
                   ....*....|....*....|
gi 530374430   569 VREENLPDENEEQKQSNQKQ 588
Cdd:TIGR00927  886 EEEENEEPLSLEWPETRQKQ 905
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
32-238 1.28e-04

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 45.39  E-value: 1.28e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430  32 LYYELQTQLRKAEAvalkyQQHQESLSAQLQVVyehRSRLEKSlqKERLEHKKAKEDFLVYKLEAQETLNKgRQDSNSRY 111
Cdd:COG3206  160 AYLEQNLELRREEA-----RKALEFLEEQLPEL---RKELEEA--EAALEEFRQKNGLVDLSEEAKLLLQQ-LSELESQL 228

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430 112 SALNVQHQMLKSQHEELKKQHSDLEEEHRKQGEDfsRTFNDHKQKYLQLQQEKEQELSKLKE---TVYNLREENRQLRKA 188
Cdd:COG3206  229 AEARAELAEAEARLAALRAQLGSGPDALPELLQS--PVIQQLRAQLAELEAELAELSARYTPnhpDVIALRAQIAALRAQ 306

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 530374430 189 -HQDIHTQLQDVKQQHKNLLSEHEQLVVTLEDHKSALAAAQTQVAEYKQLK 238
Cdd:COG3206  307 lQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLE 357
PTZ00121 PTZ00121
MAEBL; Provisional
 121-656 1.52e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 45.52  E-value: 1.52e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430  121 LKSQHEELKKQHSDLEE--EHRKQGEDFSRTFNDHKQKYLQLQQEK----EQELSKLKETVYNLREENRQLRKAhqdiht 194
Cdd:PTZ00121 1320 AKKKAEEAKKKADAAKKkaEEAKKAAEAAKAEAEAAADEAEAAEEKaeaaEKKKEEAKKKADAAKKKAEEKKKA------ 1393

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430  195 qlQDVKQQHKNLLSEHEQLVVTLEDHKSAlAAAQTQVAEYKQLKDTLNRIPSLRKPDPAEQQnVTQVAHSPQGYNTAREK 274
Cdd:PTZ00121 1394 --DEAKKKAEEDKKKADELKKAAAAKKKA-DEAKKKAEEKKKADEAKKKAEEAKKADEAKKK-AEEAKKAEEAKKKAEEA 1469

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430  275 ptREVQEVSRNNDVWQNHEAVPGRAEDTKLYA-PTHKEAEFQAPPEPIQQEVERREPEEHQVEEEHRKALEEEEMEQVGQ 353
Cdd:PTZ00121 1470 --KKADEAKKKAEEAKKADEAKKKAEEAKKKAdEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKK 1547

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430  354 AEHLEEEHDPSPEEQDREWKEQHEQREAANLLEGHA----RAEVYPSAKPMIKFQSPYEEQLEQQRLAVQQVEEAQQLRE 429
Cdd:PTZ00121 1548 ADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAeeakKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKK 1627

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430  430 HQEalhqqrlqghllrqqeqqqqqVAREMALQRQAELEEGRpqHQEQLRQQahydamdndivqgAEDQGIQGEEggayER 509
Cdd:PTZ00121 1628 AEE---------------------EKKKVEQLKKKEAEEKK--KAEELKKA-------------EEENKIKAAE----EA 1667

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430  510 DNQHQDEAEGDPGNRHEPREQGPREADPESEADRAAVEDINPADDPNNQGEDEFEEAEQVRE---ENLPDENEEQKQSNQ 586
Cdd:PTZ00121 1668 KKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKikaEEAKKEAEEDKKKAE 1747

                         490       500       510       520       530       540       550
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430  587 KQENTEVEEHLVMAGNPDQQEDNVDEQYQEEAEEEVQEDLTEEKKRELEHNAEETYGENDENTDDKNNDG 656
Cdd:PTZ00121 1748 EAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEG 1817
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 32-677 1.48e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 41.85  E-value: 1.48e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430  32 LYYELQTQLRKAE---AVALKYQQHQESLsaqlqvvyEHRSRLEKSLQKERLEHKKAKEDflvyklEAQETLNKGRQDSN 108
Cdd:COG1196  194 ILGELERQLEPLErqaEKAERYRELKEEL--------KELEAELLLLKLRELEAELEELE------AELEELEAELEELE 259

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430 109 SRYSALNVQHQMLKSQHEELKKQHSDLEEEHRKQGEDFSRTFNDhkqkyLQLQQEKEQELSKLKETvynLREENRQLRKA 188
Cdd:COG1196  260 AELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQD-----IARLEERRRELEERLEE---LEEELAELEEE 331

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430 189 HQDIHTQLQDVKQQHKNLLSEHEQLVVTLEDHKSALAAAQTQVAEYKQLKDTLNRipslrkpdpAEQQNVTQVAHSPQGY 268
Cdd:COG1196  332 LEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAE---------ELLEALRAAAELAAQL 402

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430 269 NTAREKPTREVQEVSRNNDVWQNHEAVPGRAEDTKlyapthkEAEFQAppepiQQEVERREPEEHQVEEEHRKALEEEEM 348
Cdd:COG1196  403 EELEEAEEALLERLERLEEELEELEEALAELEEEE-------EEEEEA-----LEEAAEEEAELEEEEEALLELLAELLE 470

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430 349 EQVGQAEHLEEEHDPSPEEQDREWKEQHEQREAANLLEGHARAEvypsakpmikfqspyeeQLEQQRLAVQQVEEAQQLR 428
Cdd:COG1196  471 EAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAAL-----------------LLAGLRGLAGAVAVLIGVE 533

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430 429 EHQEALHQQRLQGHLLRQQEQQQQQVAREMALQRQAELEEGRPQHQEQLRQQAHYDAMDNDIVQGAEDQGIQGEEGGAYE 508
Cdd:COG1196  534 AAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADA 613

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430 509 RDNQHQDEAEGDPGN--RHEPREQGPREADPESEADRAAVEDINPADDPNNQGEDEFEEAEQVREENLPDENEEQKQSNQ 586
Cdd:COG1196  614 RYYVLGDTLLGRTLVaaRLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEEL 693

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430 587 KQENTEVEEhlvmagnpdqqEDNVDEQYQEEAEEEVQEDLTEEKKRELEHNAEETYGENDENTDDKNNDGEEQEVRDDNR 666
Cdd:COG1196  694 ELEEALLAE-----------EEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDL 762

                        650
                 ....*....|.
gi 530374430 667 pkgreehyeeE 677
Cdd:COG1196  763 ----------E 763
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 45-243 6.30e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 39.36  E-value: 6.30e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430  45 AVALKYQQHQESLSAQLQVVYEHRSRLEKSLQKERLEHKKAKEDflVYKLEAQ-ETLNKGRQDSNSRYSALNVQHQMLKS 123
Cdd:COG4942   13 LAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQ--LAALERRiAALARRIRALEQELAALEAELAELEK 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430 124 QHEELKKQHSDLEEEHRKQ------------------GEDFSRT---------FNDHKQKYLQLQQEKEQELSKLKETVY 176
Cdd:COG4942   91 EIAELRAELEAQKEELAELlralyrlgrqpplalllsPEDFLDAvrrlqylkyLAPARREQAEELRADLAELAALRAELE 170

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 530374430 177 NLREENRQLRKAHQDIHTQLQDVKQQHKNLLSEHEQlvvTLEDHKSALAAAQTQVAEYKQLKDTLNR 243
Cdd:COG4942  171 AERAELEALLAELEEERAALEALKAERQKLLARLEK---ELAELAAELAELQQEAEELEALIARLEA 234
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 35-257 6.48e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 40.04  E-value: 6.48e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430    35 ELQTQLRKAEAVALKYQQHQESLSAQLQVVYEHRSRLEKSLQKERLEHKKAKEDFLVYKLEAQEtLNKGRQDSNSRYSAL 114
Cdd:TIGR02168  751 QLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTL-LNEEAANLRERLESL 829

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430   115 NVQHQMLKSQHEELKKQHSDLEEE------HRKQGEDFSRTFNDHKQKYLQLQQEKEQELSKLKETVYNLREENRQLRKa 188
Cdd:TIGR02168  830 ERRIAATERRLEDLEEQIEELSEDieslaaEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELES- 908

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430   189 hqdihtQLQDVKQQHKNLLSEHEQLVVTLEDHKSALAAAQTQVAE-YKQLKDTLNRIPSLRKPDPAEQQN 257
Cdd:TIGR02168  909 ------KRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEeYSLTLEEAEALENKIEDDEEEARR 972
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 73-246 7.24e-03

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 39.62  E-value: 7.24e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430   73 KSLQKERLEHKKAKEDFLVYKLEAQETLNKgrqdSNSRYSALNVQHQMLKSQHEELKKQHSDLEEEHRKQGEDFSR--TF 150
Cdd:TIGR04523 127 NKLEKQKKENKKNIDKFLTEIKKKEKELEK----LNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKleLL 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374430  151 NDHKQKYLQLQQEKEQELSKLKETVYNLREENRQLRKAHQDIHTQLQDVKQQHKNLLSEHEQLVVTLEDHKSALAAAQTQ 230
Cdd:TIGR04523 203 LSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKK 282

                         170
                  ....*....|....*.
gi 530374430  231 VaeyKQLKDTLNRIPS 246
Cdd:TIGR04523 283 I---KELEKQLNQLKS 295
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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