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FRG1CP FSHD region gene 1 family member C, pseudogene [ Homo sapiens (human) ]

Gene ID: 100289097, updated on 10-Dec-2024

Summary

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Official Symbol
FRG1CPprovided by HGNC
Official Full Name
FSHD region gene 1 family member C, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:51762
See related
Ensembl:ENSG00000282826 AllianceGenome:HGNC:51762
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in gall bladder (RPKM 12.8), small intestine (RPKM 10.9) and 25 other tissues See more
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Genomic context

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See FRG1CP in Genome Data Viewer
Location:
20q11.1
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (28580633..28602665, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (29562016..29584048)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:26188387-26188888 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:26189772-26190332 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:26214685-26215184 Neighboring gene uncharacterized LOC124904967 Neighboring gene NANOG hESC enhancer GRCh37_chr20:26280570-26281071 Neighboring gene MIR663A host gene Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr20:26313876-26314454 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr20:26318213-26318766 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr20:26314455-26315031 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr20:26313298-26313875 Neighboring gene microRNA 663a Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17681 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17682 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12755 Neighboring gene RNA, 5.8S ribosomal pseudogene Neighboring gene FSHD region gene 1 family member D, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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Related articles in PubMed

  1. Proteomic analysis of HIV-1 Gag interacting partners using proximity-dependent biotinylation. Le Sage V, et al. Virol J, 2015 Sep 11. PMID 26362536, Free PMC Article
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh38)

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Clone Names

  • FLJ32537

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_132315.1 RNA Sequence

    Status: INFERRED

    Source sequence(s)
    ABBA01014710
    Related
    ENST00000358464.11

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    28580633..28602665 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    29562016..29584048
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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