U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC127822003 H3K4me1 hESC enhancer GRCh37_chr11:72363808-72364353 [ Homo sapiens (human) ]

Gene ID: 127822003, updated on 12-Sep-2024

Summary

Go to the top of the page Help
Gene symbol
LOC127822003
Gene description
H3K4me1 hESC enhancer GRCh37_chr11:72363808-72364353
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Nov 2022]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC127822003 in Genome Data Viewer
Location:
chromosome: 11
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (72652764..72653309)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (72580968..72581513)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (72363808..72364353)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene phosphodiesterase 2A Neighboring gene uncharacterized LOC105369377 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:72329425-72329944 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:72336883-72337427 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:72337428-72337971 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:72339671-72340196 Neighboring gene RNA, U7 small nuclear 105 pseudogene Neighboring gene microRNA 139 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:72340723-72341248 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:72341249-72341773 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:72344820-72345416 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:72345417-72346012 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:72353123-72353623 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:72354058-72354647 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:72367701-72368202 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:72373037-72373701 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:72375031-72375693 Neighboring gene PDE2A antisense RNA 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:72379106-72379610 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5193 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:72384035-72384661 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:72384662-72385287 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:72385288-72385914 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:72385915-72386539 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:72386690-72387190 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3723 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:72391485-72392310 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:72395779-72396338 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3724 Neighboring gene ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:72415096-72415932 Neighboring gene ARAP1 antisense RNA 2

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_123447.1 

    Range
    101..646
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    72652764..72653309
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    72580968..72581513
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases