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Oatp30B Organic anion transporting polypeptide 30B [ Ixodes scapularis (black-legged tick) ]

Gene ID: 8040254, updated on 31-Jul-2024

Summary

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Gene symbol
Oatp30B
Gene description
Organic anion transporting polypeptide 30B
See related
VectorBase:ISCP_009607; EnsemblRapid:LOC8040254
Gene type
protein coding
RefSeq status
MODEL
Organism
Ixodes scapularis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Ixodida; Ixodoidea; Ixodidae; Ixodinae; Ixodes
Also known as
oatp4056
Orthologs
fruit fly all
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Genomic context

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See Oatp30B in Genome Data Viewer
Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
103 current ASM1692078v2 (GCF_016920785.2) Unplaced Scaffold NW_024609857.1 (104935927..105603031)
102 previous assembly Ixodes_scapularus_ComboLowHiFi (GCF_016920785.1) Unplaced Scaffold NW_024389242.1 (64145..264229, complement)

NW_024609857.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121836780 Neighboring gene MICOS subunit 26/27 Neighboring gene zinc finger C2HC domain-containing protein 1A Neighboring gene uncharacterized LOC121836559 Neighboring gene solute carrier organic anion transporter family member 74D Neighboring gene uncharacterized LOC121836560 Neighboring gene uncharacterized LOC8038406 Neighboring gene uncharacterized LOC121836561 Neighboring gene uncharacterized LOC8051545 Neighboring gene solute carrier organic anion transporter family member 74D Neighboring gene uncharacterized LOC8051543 Neighboring gene glutathione S-transferase omega-1-like Neighboring gene transcription initiation factor TFIID subunit 4-like Neighboring gene tigger transposable element-derived protein 6-like Neighboring gene pyrimidodiazepine synthase Neighboring gene transfer RNA phenylalanine (anticodon GAA) Neighboring gene glutathione S-transferase omega-1 Neighboring gene glutathione S-transferase omega-1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Repression of tick microRNA-133 induces organic anion transporting polypeptide expression critical for Anaplasma phagocytophilum survival in the vector and transmission to the vertebrate host. Ramasamy E, et al. PLoS Genet, 2020 Jul. PMID 32614824, Free PMC Article
  2. Comparative bioinformatics, temporal and spatial expression analyses of Ixodes scapularis organic anion transporting polypeptides. Radulović Z, et al. Ticks Tick Borne Dis, 2014 Apr. PMID 24582512, Free PMC Article
  3. Transcriptome of the female synganglion of the black-legged tick Ixodes scapularis (Acari: Ixodidae) with comparison between Illumina and 454 systems. Egekwu N, et al. PLoS One, 2014. PMID 25075967, Free PMC Article
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sodium-independent organic anion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sodium-independent organic anion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
solute carrier organic anion transporter family member 5A1
Names
organic anion transporting polypeptide
organic anion transporting protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ixodes scapularis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1692078v2

Genomic

  1. NW_024609857.1 Reference ASM1692078v2

    Range
    104935927..105603031
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042291979.1 → XP_042147913.1  solute carrier organic anion transporter family member 5A1 isoform X1

    UniProtKB/TrEMBL
    A0A7D5FZN5
    Related
    XP_042147913.1, XM_042291979.1
    Conserved Domains (1) summary
    cd17404
    Location:158 → 716
    MFS_SLCO5_OATP5; Solute carrier organic anion transporter 5 family of the Major Facilitator Superfamily of transporters

  2. XM_029974800.4 → XP_029830660.3  solute carrier organic anion transporter family member 5A1 isoform X2

    UniProtKB/TrEMBL
    A0A7D5FZN5
    Related
    XP_029830660.3, XM_029974800.4
    Conserved Domains (1) summary
    cd17404
    Location:158 → 715
    MFS_SLCO5_OATP5; Solute carrier organic anion transporter 5 family of the Major Facilitator Superfamily of transporters

  3. XM_029974797.4 → XP_029830657.3  solute carrier organic anion transporter family member 5A1 isoform X1

    UniProtKB/TrEMBL
    A0A7D5FZN5
    Related
    XP_029830657.3, XM_029974797.4
    Conserved Domains (1) summary
    cd17404
    Location:158 → 716
    MFS_SLCO5_OATP5; Solute carrier organic anion transporter 5 family of the Major Facilitator Superfamily of transporters

  4. XM_042291980.1 → XP_042147914.1  solute carrier organic anion transporter family member 5A1 isoform X1

    UniProtKB/TrEMBL
    A0A7D5FZN5
    Related
    XP_042147914.1, XM_042291980.1
    Conserved Domains (1) summary
    cd17404
    Location:158 → 716
    MFS_SLCO5_OATP5; Solute carrier organic anion transporter 5 family of the Major Facilitator Superfamily of transporters
Nucleotide Protein
Heading Accession and Version

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