U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

EMC4 ER membrane protein complex subunit 4 [ Ixodes scapularis (black-legged tick) ]

Gene ID: 8053821, updated on 31-Jul-2024

Summary

Go to the top of the page Help
Gene symbol
EMC4
Gene description
ER membrane protein complex subunit 4
See related
VectorBase:ISCP_027333; EnsemblRapid:LOC8053821
Gene type
protein coding
RefSeq status
MODEL
Organism
Ixodes scapularis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Ixodida; Ixodoidea; Ixodidae; Ixodinae; Ixodes
Orthologs
fruit fly all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See EMC4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
103 current ASM1692078v2 (GCF_016920785.2) Unplaced Scaffold NW_024609884.1 (12573273..12582693, complement)
102 previous assembly Ixodes_scapularus_ComboLowHiFi (GCF_016920785.1) Unplaced Scaffold NW_024388437.1 (162834..172262)

NW_024609884.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC8053823 Neighboring gene phosphatidylinositol-3-phosphatase SAC1 Neighboring gene tyrosine aminotransferase Neighboring gene uncharacterized LOC115312006

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. An annotated catalog of salivary gland transcripts from Ixodes scapularis ticks. Ribeiro JM, et al. Insect Biochem Mol Biol, 2006 Feb. PMID 16431279
  2. Transcriptome of the female synganglion of the black-legged tick Ixodes scapularis (Acari: Ixodidae) with comparison between Illumina and 454 systems. Egekwu N, et al. PLoS One, 2014. PMID 25075967, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in protein folding in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of EMC complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
ER membrane protein complex subunit 4
Names
putative membrane protein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Ixodes scapularis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1692078v2

Genomic

  1. NW_024609884.1 Reference ASM1692078v2

    Range
    12573273..12582693 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040217087.3 → XP_040073021.1  ER membrane protein complex subunit 4

    UniProtKB/TrEMBL
    Q4PM88
    Related
    XP_040073021.1, XM_040217087.3
    Conserved Domains (1) summary
    pfam06417
    Location:48 → 161
    DUF1077; Protein of unknown function (DUF1077)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.