U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    RFC1 replication factor C subunit 1 [ Lonchura striata (white-rumped munia) ]

    Gene ID: 110472006, updated on 2-Oct-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    RFC1
    Gene description
    replication factor C subunit 1
    Locus tag
    RLOC_00005848
    See related
    Ensembl:ENSLSDG00000014118
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lonchura striata
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Lonchura
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See RFC1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    RS_2024_09 current lonStrDom2 (GCF_005870125.1) 4 NC_042569.1 (49026838..49060595)

    Chromosome 4 - NC_042569.1Genomic Context describing neighboring genes Neighboring gene lipoic acid synthetase Neighboring gene ribosomal protein L9 Neighboring gene klotho beta Neighboring gene uncharacterized LOC116183530 Neighboring gene WD repeat domain 19 Neighboring gene kelch like family member 5

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_042569.1 Chromosome 4 Reference lonStrDom2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA clamp loader activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA clamp unloader activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in DNA replication IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of DNA replication factor C complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    replication factor C subunit 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_005870125.1-RS_2024_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference lonStrDom2 Primary Assembly

    Genomic

    1. NC_042569.1 Reference lonStrDom2 Primary Assembly

      Range
      49026838..49060595
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021533185.2 → XP_021388860.2  replication factor C subunit 1 isoform X1

      UniProtKB/TrEMBL
      A0A218ULZ5
      Conserved Domains (4) summary
      COG5275
      Location:322 → 545
      COG5275; BRCT domain type II [General function prediction only]
      PRK04195
      Location:617 → 1181
      PRK04195; replication factor C large subunit; Provisional
      cd17752
      Location:435 → 513
      BRCT_RFC1; BRCT domain of replication factor C subunit 1 (RFC1) and similar proteins
      pfam08519
      Location:946 → 1099
      RFC1; Replication factor RFC1 C terminal domain

    2. XM_021533184.2 → XP_021388859.1  replication factor C subunit 1 isoform X2

      UniProtKB/TrEMBL
      A0A218ULZ5
      Related
      ENSLSDP00000019894.1
      Conserved Domains (4) summary
      COG5275
      Location:279 → 502
      COG5275; BRCT domain type II [General function prediction only]
      PRK04195
      Location:574 → 1138
      PRK04195; replication factor C large subunit; Provisional
      cd17752
      Location:392 → 470
      BRCT_RFC1; BRCT domain of replication factor C subunit 1 (RFC1) and similar proteins
      pfam08519
      Location:903 → 1056
      RFC1; Replication factor RFC1 C terminal domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.