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    TAF6 TATA-box binding protein associated factor 6 [ Talpa occidentalis (Iberian mole) ]

    Gene ID: 119241602, updated on 21-Mar-2024

    Summary

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    Gene symbol
    TAF6
    Gene description
    TATA-box binding protein associated factor 6
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Talpa occidentalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Eulipotyphla; Talpidae; Talpa
    Orthologs
    human mouse all
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    Genomic context

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    See TAF6 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2023_03 current MPIMG_talOcc4v2.1 (GCF_014898055.3) Unplaced Scaffold NW_023601212.1 (81111018..81118592)

    NW_023601212.1Genomic Context describing neighboring genes Neighboring gene paired immunoglobulin-like type 2 receptor beta Neighboring gene metallo-beta-lactamase domain containing 1 Neighboring gene canopy FGF signaling regulator 4 Neighboring gene adaptor related protein complex 4 subunit mu 1 Neighboring gene minichromosome maintenance complex component 7 Neighboring gene COP9 signalosome subunit 6

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_023601212 Unplaced Scaffold Reference MPIMG_talOcc4v2.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II general transcription initiation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coactivator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA polymerase II preinitiation complex assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transcription initiation at RNA polymerase II promoter IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SAGA complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of SLIK (SAGA-like) complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of transcription factor TFIID complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription initiation factor TFIID subunit 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_014898055.3-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MPIMG_talOcc4v2.1 Primary Assembly

    Genomic

    1. NW_023601212.1 Reference MPIMG_talOcc4v2.1 Primary Assembly

      Range
      81111018..81118592
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_037506996.1 → XP_037362893.1  transcription initiation factor TFIID subunit 6 isoform X2

      Conserved Domains (3) summary
      COG5095
      Location:9 → 408
      TAF6; Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
      PRK10672
      Location:597 → 677
      PRK10672; endolytic peptidoglycan transglycosylase RlpA
      cd08050
      Location:214 → 430
      TAF6C; C-terminal domain of TATA Binding Protein (TBP) Associated Factor 6 (TAF6)

    2. XM_054693656.1 → XP_054549631.1  transcription initiation factor TFIID subunit 6 isoform X2

    3. XM_037506993.1 → XP_037362890.1  transcription initiation factor TFIID subunit 6 isoform X1

      Conserved Domains (3) summary
      COG5095
      Location:39 → 438
      TAF6; Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
      PRK10672
      Location:627 → 707
      PRK10672; endolytic peptidoglycan transglycosylase RlpA
      cd08050
      Location:244 → 460
      TAF6C; C-terminal domain of TATA Binding Protein (TBP) Associated Factor 6 (TAF6)

    4. XM_037506995.2 → XP_037362892.1  transcription initiation factor TFIID subunit 6 isoform X2

      Conserved Domains (3) summary
      COG5095
      Location:9 → 408
      TAF6; Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
      PRK10672
      Location:597 → 677
      PRK10672; endolytic peptidoglycan transglycosylase RlpA
      cd08050
      Location:214 → 430
      TAF6C; C-terminal domain of TATA Binding Protein (TBP) Associated Factor 6 (TAF6)

    5. XM_037506994.2 → XP_037362891.1  transcription initiation factor TFIID subunit 6 isoform X2

      Conserved Domains (3) summary
      COG5095
      Location:9 → 408
      TAF6; Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
      PRK10672
      Location:597 → 677
      PRK10672; endolytic peptidoglycan transglycosylase RlpA
      cd08050
      Location:214 → 430
      TAF6C; C-terminal domain of TATA Binding Protein (TBP) Associated Factor 6 (TAF6)
    Nucleotide Protein
    Heading Accession and Version

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