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    XRCC4 X-ray repair cross complementing 4 [ Molothrus ater ]

    Gene ID: 118699847, updated on 3-Aug-2024

    Summary

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    Gene symbol
    XRCC4
    Gene description
    X-ray repair cross complementing 4
    See related
    EnsemblRapid:ENSMRTG00000003179
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Molothrus ater
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Icteridae; Molothrus
    Orthologs
    human mouse all
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    Genomic context

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    See XRCC4 in Genome Data Viewer
    Location:
    chromosome: Z
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2023_03 current BPBGC_Mater_1.1 (GCF_012460135.2) Z NC_050511.2 (68286253..68430391, complement)
    100 previous assembly BPBGC_Mater_1.0 (GCF_012460135.1) Z NC_050511.1 (3423241..3566987)

    Chromosome Z - NC_050511.2Genomic Context describing neighboring genes Neighboring gene hyaluronan and proteoglycan link protein 1 Neighboring gene versican Neighboring gene transmembrane protein 167A Neighboring gene V-type proton ATPase subunit S1-like protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA ligation involved in DNA repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in double-strand break repair via nonhomologous end joining IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in immunoglobulin V(D)J recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to X-ray IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of DNA ligase IV complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of DNA-dependent protein kinase-DNA ligase 4 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA repair protein XRCC4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_012460135.2-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference BPBGC_Mater_1.1 Primary Assembly

    Genomic

    1. NC_050511.2 Reference BPBGC_Mater_1.1 Primary Assembly

      Range
      68286253..68430391 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054518013.1 → XP_054373988.1  DNA repair protein XRCC4 isoform X2

    2. XM_036404039.2 → XP_036259932.1  DNA repair protein XRCC4 isoform X1

      Related
      ENSMRTP00000004322.1
      Conserved Domains (1) summary
      pfam06632
      Location:2 → 329
      XRCC4; DNA double-strand break repair and V(D)J recombination protein XRCC4

    3. XM_036404040.2 → XP_036259933.1  DNA repair protein XRCC4 isoform X1

      Conserved Domains (1) summary
      pfam06632
      Location:2 → 329
      XRCC4; DNA double-strand break repair and V(D)J recombination protein XRCC4
    Nucleotide Protein
    Heading Accession and Version

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