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    LOC112813463 tripartite motif-containing protein 26 [ Callorhinus ursinus (northern fur seal) ]

    Gene ID: 112813463, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC112813463
    Gene description
    tripartite motif-containing protein 26
    See related
    EnsemblRapid:ENSCURG00000023921
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Callorhinus ursinus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Otariidae; Callorhinus
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    Genomic context

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    See LOC112813463 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    100 current ASM326570v1 (GCF_003265705.1) Unplaced Scaffold NW_020313108.1 (1231396..1258030)

    NW_020313108.1Genomic Context describing neighboring genes Neighboring gene olfactory receptor 10C1-like Neighboring gene olfactory receptor 2H2-like Neighboring gene tripartite motif-containing protein 26-like Neighboring gene tripartite motif containing 15 Neighboring gene tripartite motif containing 10 Neighboring gene tripartite motif containing 40

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_020313108 Unplaced Scaffold Reference ASM326570v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tripartite motif-containing protein 26

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Callorhinus ursinus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM326570v1 Primary Assembly

    Genomic

    1. NW_020313108.1 Reference ASM326570v1 Primary Assembly

      Range
      1231396..1258030
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025858511.1 → XP_025714296.1  tripartite motif-containing protein 26

      UniProtKB/TrEMBL
      A0A3Q7N0B1
      Conserved Domains (5) summary
      smart00336
      Location:100 → 138
      BBOX; B-Box-type zinc finger
      cd15826
      Location:314 → 539
      SPRY_PRY_TRIM15; PRY/SPRY domain in tripartite motif-binding protein 15 (TRIM15)
      cd16598
      Location:13 → 57
      RING-HC_TRIM26_C-IV; RING finger, HC subclass, found in tripartite motif-containing protein 26 (TRIM26) and similar proteins
      cl25732
      Location:145 → 304
      SMC_N; RecF/RecN/SMC N terminal domain
      cl28410
      Location:3 → 98
      RAD18; RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

    2. XM_025858508.1 → XP_025714293.1  tripartite motif-containing protein 26

      UniProtKB/TrEMBL
      A0A3Q7N0B1
      Conserved Domains (5) summary
      smart00336
      Location:100 → 138
      BBOX; B-Box-type zinc finger
      cd15826
      Location:314 → 539
      SPRY_PRY_TRIM15; PRY/SPRY domain in tripartite motif-binding protein 15 (TRIM15)
      cd16598
      Location:13 → 57
      RING-HC_TRIM26_C-IV; RING finger, HC subclass, found in tripartite motif-containing protein 26 (TRIM26) and similar proteins
      cl25732
      Location:145 → 304
      SMC_N; RecF/RecN/SMC N terminal domain
      cl28410
      Location:3 → 98
      RAD18; RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

    3. XM_025858510.1 → XP_025714295.1  tripartite motif-containing protein 26

      UniProtKB/TrEMBL
      A0A3Q7N0B1
      Related
      ENSCURP00000038864.1, ENSCURT00000044310.1
      Conserved Domains (5) summary
      smart00336
      Location:100 → 138
      BBOX; B-Box-type zinc finger
      cd15826
      Location:314 → 539
      SPRY_PRY_TRIM15; PRY/SPRY domain in tripartite motif-binding protein 15 (TRIM15)
      cd16598
      Location:13 → 57
      RING-HC_TRIM26_C-IV; RING finger, HC subclass, found in tripartite motif-containing protein 26 (TRIM26) and similar proteins
      cl25732
      Location:145 → 304
      SMC_N; RecF/RecN/SMC N terminal domain
      cl28410
      Location:3 → 98
      RAD18; RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

    4. XM_025858509.1 → XP_025714294.1  tripartite motif-containing protein 26

      UniProtKB/TrEMBL
      A0A3Q7N0B1
      Conserved Domains (5) summary
      smart00336
      Location:100 → 138
      BBOX; B-Box-type zinc finger
      cd15826
      Location:314 → 539
      SPRY_PRY_TRIM15; PRY/SPRY domain in tripartite motif-binding protein 15 (TRIM15)
      cd16598
      Location:13 → 57
      RING-HC_TRIM26_C-IV; RING finger, HC subclass, found in tripartite motif-containing protein 26 (TRIM26) and similar proteins
      cl25732
      Location:145 → 304
      SMC_N; RecF/RecN/SMC N terminal domain
      cl28410
      Location:3 → 98
      RAD18; RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
    Nucleotide Protein
    Heading Accession and Version

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