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    LOC112951022 protein PML-like [ Nothoprocta perdicaria ]

    Gene ID: 112951022, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC112951022
    Gene description
    protein PML-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Nothoprocta perdicaria
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Tinamiformes; Tinamidae; Nothoprocta
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    Genomic context

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    See LOC112951022 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    100 current notPer1 (GCF_003342845.1) Unplaced Scaffold NW_020455569.1 (202860..211464)

    NW_020455569.1Genomic Context describing neighboring genes Neighboring gene protein PML-like Neighboring gene stomatin like 1 Neighboring gene uncharacterized LOC112951014 Neighboring gene zona pellucida sperm-binding protein 3-like Neighboring gene zona pellucida sperm-binding protein 3-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_020455569 Unplaced Scaffold Reference notPer1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in PML body organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intrinsic apoptotic signaling pathway in response to DNA damage IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in PML body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein PML-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Nothoprocta perdicaria Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference notPer1

    Genomic

    1. NW_020455569.1 Reference notPer1

      Range
      202860..211464
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026043647.1 → XP_025899432.1  protein PML-like

      Conserved Domains (2) summary
      pfam12126
      Location:216 → 411
      DUF3583; Protein of unknown function (DUF3583)
      cd16579
      Location:27 → 65
      RING-HC_PML_C-V; RING finger, HC subclass, found in promyelocytic leukemia protein (PML) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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