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    Trim26 tripartite motif containing 26 [ Urocitellus parryii (Arctic ground squirrel) ]

    Gene ID: 113201553, updated on 15-Mar-2024

    Summary

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    Gene symbol
    Trim26
    Gene description
    tripartite motif containing 26
    See related
    Ensembl:ENSUPAG00010015358
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Urocitellus parryii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Urocitellus
    Orthologs
    human mouse all
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    Genomic context

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    See Trim26 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    100 current ASM342692v1 (GCF_003426925.1) Unplaced Scaffold NW_020540565.1 (347867..377354, complement)

    NW_020540565.1Genomic Context describing neighboring genes Neighboring gene tripartite motif containing 10 Neighboring gene tripartite motif containing 15 Neighboring gene tripartite motif-containing protein 26-like Neighboring gene HLA class I histocompatibility antigen, alpha chain G-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_020540565 Unplaced Scaffold Reference ASM342692v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tripartite motif-containing protein 26

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Urocitellus parryii Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM342692v1

    Genomic

    1. NW_020540565.1 Reference ASM342692v1

      Range
      347867..377354 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026415313.1 → XP_026271098.1  tripartite motif-containing protein 26

      UniProtKB/TrEMBL
      A0A8D2HQY7, A0A8D2HXD2
      Conserved Domains (4) summary
      TIGR02169
      Location:147 → 248
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
      cd15826
      Location:314 → 537
      SPRY_PRY_TRIM15; PRY/SPRY domain in tripartite motif-binding protein 15 (TRIM15)
      cd16598
      Location:13 → 57
      RING-HC_TRIM26_C-IV; RING finger, HC subclass, found in tripartite motif-containing protein 26 (TRIM26) and similar proteins
      cd19765
      Location:100 → 138
      Bbox2_TRIM10-like; B-box-type 2 zinc finger found in tripartite motif-containing proteins, TRIM10, TRIM15, TRIM26, TRIM31 and similar proteins

    2. XM_026415314.1 → XP_026271099.1  tripartite motif-containing protein 26

      UniProtKB/TrEMBL
      A0A8D2HQY7, A0A8D2HXD2
      Related
      ENSUPAP00010019429.1, ENSUPAT00010022108.1
      Conserved Domains (4) summary
      TIGR02169
      Location:147 → 248
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
      cd15826
      Location:314 → 537
      SPRY_PRY_TRIM15; PRY/SPRY domain in tripartite motif-binding protein 15 (TRIM15)
      cd16598
      Location:13 → 57
      RING-HC_TRIM26_C-IV; RING finger, HC subclass, found in tripartite motif-containing protein 26 (TRIM26) and similar proteins
      cd19765
      Location:100 → 138
      Bbox2_TRIM10-like; B-box-type 2 zinc finger found in tripartite motif-containing proteins, TRIM10, TRIM15, TRIM26, TRIM31 and similar proteins

    3. XM_026415312.1 → XP_026271097.1  tripartite motif-containing protein 26

      UniProtKB/TrEMBL
      A0A8D2HQY7, A0A8D2HXD2
      Related
      ENSUPAP00010019413.1, ENSUPAT00010022089.1
      Conserved Domains (4) summary
      TIGR02169
      Location:147 → 248
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
      cd15826
      Location:314 → 537
      SPRY_PRY_TRIM15; PRY/SPRY domain in tripartite motif-binding protein 15 (TRIM15)
      cd16598
      Location:13 → 57
      RING-HC_TRIM26_C-IV; RING finger, HC subclass, found in tripartite motif-containing protein 26 (TRIM26) and similar proteins
      cd19765
      Location:100 → 138
      Bbox2_TRIM10-like; B-box-type 2 zinc finger found in tripartite motif-containing proteins, TRIM10, TRIM15, TRIM26, TRIM31 and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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