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    psma6b proteasome 20S subunit alpha 6b [ Denticeps clupeoides (denticle herring) ]

    Gene ID: 114803238, updated on 15-Mar-2024

    Summary

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    Gene symbol
    psma6b
    Gene description
    proteasome 20S subunit alpha 6b
    See related
    Ensembl:ENSDCDG00000004538
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Denticeps clupeoides
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Denticipitoidei; Denticipitidae; Denticeps
    Orthologs
    zebrafish all
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    Genomic context

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    See psma6b in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    100 current fDenClu1.1 (GCF_900700375.1) 14 NC_041720.1 (5108887..5111736)

    Chromosome 14 - NC_041720.1Genomic Context describing neighboring genes Neighboring gene fibronectin leucine rich transmembrane protein 2 Neighboring gene protein FAM177A1-like Neighboring gene nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a Neighboring gene BRMS1 like transcriptional repressor b

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_041720.1 Chromosome 14 Reference fDenClu1.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of proteasome core complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of proteasome core complex, alpha-subunit complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    proteasome subunit alpha type-6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Denticeps clupeoides Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fDenClu1.1

    Genomic

    1. NC_041720.1 Reference fDenClu1.1

      Range
      5108887..5111736
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029002667.1 → XP_028858500.1  proteasome subunit alpha type-6

      UniProtKB/TrEMBL
      A0A8C3ZHM0, A0A8C3ZJ87
      Related
      ENSDCDP00000009038.1, ENSDCDT00000009954.1
      Conserved Domains (1) summary
      cd03754
      Location:8 → 220
      proteasome_alpha_type_6; The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming ...
    Nucleotide Protein
    Heading Accession and Version

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