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    LOC100892268 chromodomain-helicase-DNA-binding protein 1-like [ Strongylocentrotus purpuratus (purple sea urchin) ]

    Gene ID: 100892268, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC100892268
    Gene description
    chromodomain-helicase-DNA-binding protein 1-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Strongylocentrotus purpuratus
    Lineage
    Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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    Genomic context

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    See LOC100892268 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145597.1 (7596865..7628529)
    Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003579721.1 (8753..16870, complement)

    NW_022145597.1Genomic Context describing neighboring genes Neighboring gene cysteine-rich secretory protein 2 Neighboring gene uncharacterized LOC115922592 Neighboring gene DNA-directed RNA polymerase II subunit RPB1-like Neighboring gene guanidinobutyrase-like Neighboring gene guanidinobutyrase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chromodomain-helicase-DNA-binding protein 1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Spur_5.0 Primary Assembly

    Genomic

    1. NW_022145597.1 Reference Spur_5.0 Primary Assembly

      Range
      7596865..7628529
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030981734.1 → XP_030837594.1  chromodomain-helicase-DNA-binding protein 1-like isoform X1

      UniProtKB/TrEMBL
      A0A7M7NLP8
      Conserved Domains (3) summary
      PLN03142
      Location:35 → 548
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18431
      Location:963 → 1047
      BRCT_DNA_ligase_III; BRCT domain of DNA ligase 3 (LIG3) and similar proteins
      cl00019
      Location:729 → 857
      Macro; Macro domain, a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ...

    2. XM_030981735.1 → XP_030837595.1  chromodomain-helicase-DNA-binding protein 1-like isoform X2

      UniProtKB/TrEMBL
      A0A7M7NJM3
      Conserved Domains (1) summary
      PLN03142
      Location:35 → 548
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    Nucleotide Protein
    Heading Accession and Version

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