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    LOC114971210 DNA ligase 3-like [ Acropora millepora ]

    Gene ID: 114971210, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC114971210
    Gene description
    DNA ligase 3-like
    See related
    EnsemblRapid:LOC114971210
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Acropora millepora
    Lineage
    Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Scleractinia; Astrocoeniina; Acroporidae; Acropora
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    Genomic context

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    See LOC114971210 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    27
    Annotation release Status Assembly Chr Location
    101 current Amil_v2.1 (GCF_013753865.1) 6 NC_058071.1 (3330987..3349334)
    100 previous assembly amil_sf_1.1 (GCF_004143615.1) Unplaced Scaffold NW_021126733.1 (139010..157501, complement)

    Chromosome 6 - NC_058071.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114971220 Neighboring gene uncharacterized LOC114971207 Neighboring gene integrin-linked kinase-associated serine/threonine phosphatase 2C-like Neighboring gene glyceraldehyde-3-phosphate dehydrogenase-like Neighboring gene cyclin-dependent kinase 11B-like Neighboring gene tetratricopeptide repeat protein 28-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA ligase (ATP) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in DNA recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in base-excision repair, DNA ligation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in double-strand break repair via alternative nonhomologous end joining IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in lagging strand elongation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitochondrial DNA repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of DNA ligase III-XRCC1 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA ligase 3-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Acropora millepora Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Amil_v2.1

    Genomic

    1. NC_058071.1 Reference Amil_v2.1

      Range
      3330987..3349334
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_044322568.1 → XP_044178503.1  DNA ligase 3-like isoform X1

      Related
      XP_044178503.1, XM_044322568.1
      Conserved Domains (3) summary
      PLN03123
      Location:35 → 135
      PLN03123; poly [ADP-ribose] polymerase; Provisional
      TIGR00574
      Location:244 → 758
      dnl1; DNA ligase I, ATP-dependent (dnl1)
      cd18431
      Location:868 → 945
      BRCT_DNA_ligase_III; BRCT domain of DNA ligase 3 (LIG3) and similar proteins

    2. XM_044322569.1 → XP_044178504.1  DNA ligase 3-like isoform X2

      Related
      XP_044178504.1, XM_044322569.1
      Conserved Domains (3) summary
      PLN03123
      Location:35 → 135
      PLN03123; poly [ADP-ribose] polymerase; Provisional
      TIGR00574
      Location:244 → 758
      dnl1; DNA ligase I, ATP-dependent (dnl1)
      cd18431
      Location:856 → 933
      BRCT_DNA_ligase_III; BRCT domain of DNA ligase 3 (LIG3) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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