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    LOC100370203 DNA ligase 3-like [ Saccoglossus kowalevskii ]

    Gene ID: 100370203, updated on 22-Jan-2025

    Summary

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    Gene symbol
    LOC100370203
    Gene description
    DNA ligase 3-like
    See related
    EnsemblRapid:LOC100370203
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Saccoglossus kowalevskii
    Lineage
    Eukaryota; Metazoa; Hemichordata; Enteropneusta; Harrimaniidae; Saccoglossus
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    Genomic context

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    See LOC100370203 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    101 current Skow_1.1 (GCF_000003605.2) Unplaced Scaffold NW_003119935.1 (24683..46725)

    NW_003119935.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102801114 Neighboring gene SCO-spondin-like Neighboring gene glyceraldehyde-3-phosphate dehydrogenase-like Neighboring gene uncharacterized LOC102801354

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003119935 unplaced scaffold reference Skow_1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA ligase (ATP) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in DNA recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in base-excision repair, DNA ligation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in double-strand break repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in lagging strand elongation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of DNA ligase III-XRCC1 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA ligase 3-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Saccoglossus kowalevskii Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Skow_1.1 Primary Assembly

    Genomic

    1. NW_003119935.1 Reference Skow_1.1 Primary Assembly

      Range
      24683..46725
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006814837.1 → XP_006814900.1  DNA ligase 3-like

      Related
      XP_006814900.1, XM_006814837.1
      Conserved Domains (7) summary
      cd07967
      Location:586 → 724
      OBF_DNA_ligase_III; The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase III is a DNA-binding module that is part of the catalytic core unit
      cd07902
      Location:368 → 580
      Adenylation_DNA_ligase_III; Adenylation domain of DNA Ligase III
      TIGR00574
      Location:218 → 730
      dnl1; DNA ligase I, ATP-dependent (dnl1)
      pfam00645
      Location:23 → 92
      zf-PARP; Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
      pfam04675
      Location:162 → 329
      DNA_ligase_A_N; DNA ligase N terminus
      pfam10283
      Location:795 → 816
      zf-CCHH; Zinc-finger (CX5CX6HX5H) motif
      pfam16759
      Location:842 → 913
      LIG3_BRCT; DNA ligase 3 BRCT domain
    Nucleotide Protein
    Heading Accession and Version

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