|
| Status |
Public on Aug 11, 2010 |
| Title |
LTB_LON_test043 |
| Sample type |
RNA |
| |
|
| Source name |
Whole Blood from patient with Latent TB
|
| Organism |
Homo sapiens |
| Characteristics |
age: 60
gender: Female
ethnicity: South Asian
illness: Latent
geographical region: London
bcg vaccinated: Yes
region of birth: non_UK_Born
tst: 21
exposure_latent: Contact_Screen
index_case_disease_site: pulm
smear of index case: Sm+
modal x-ray grade: No disease
sputum_smear: n.a
sputum_culture: n.a
bal_smear: n.a
bal_culture: n.a
isolate_sensitivity: n.a
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was isolated using the MagMAX™-96 Blood RNA Isolation Kit (Applied Biosystems/Ambion, Austin, TX, USA) according to the manufacturer's instructions
|
| Label |
biotin
|
| Label protocol |
Biotinylated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion
|
| |
|
| Hybridization protocol |
Hybridize 12-Sample Beadchip
|
| Scan protocol |
SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
|
| Description |
Whole Blood from patient with Latent TB recruited in London . The subject was an asymptomatic household contact of an active patient or a new entrant from an endemic country and tested positive by both IGRA and tuberculin skin test.
|
| Data processing |
The data were analysed using BeadStudio version 1.5.1.3 using the average chip normalization method.
|
| |
|
| Submission date |
Dec 12, 2009 |
| Last update date |
Jan 04, 2018 |
| Contact name |
Damien Chaussabel |
| E-mail(s) |
DChaussabel@benaroyaresearch.org
|
| Organization name |
Baylor Institute for Immunology Research
|
| Street address |
3434 Live Oak
|
| City |
Dallas |
| State/province |
TX |
| ZIP/Postal code |
75204 |
| Country |
USA |
| |
|
| Platform ID |
GPL6947 |
| Series (2) |
| GSE19444 |
Blood Transcriptional Profiles of Active and Latent TB (UK Test Set) |
| GSE19491 |
Blood Transcriptional Profiles in Human Active and Latent Tuberculosis |
|
| Relations |
| Reanalyzed by |
GSM2886038 |
