|
| Status |
Public on May 18, 2015 |
| Title |
702010838E |
| Sample type |
RNA |
| |
|
| Source name |
Whole blood
|
| Organism |
Homo sapiens |
| Characteristics |
illness: HIV
ethnicity: African
race: African Chewa
age: 24
gender: Female
week: E
calculated viral set point: 48,978
treatment: NO
viral load: 66913
cd4 count: ND
feibig stage: 5
dataset: Validation Set
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was isolated using the MagMAX™-96 Blood RNA Isolation Kit (Applied Biosystems/Ambion, Austin, TX, USA) according to the manufacturer's instructions
|
| Label |
biotin
|
| Label protocol |
Biotinylated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
|
| |
|
| Hybridization protocol |
Hybridize 12-Sample Beadchip
|
| Scan protocol |
SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
|
| Data processing |
The data were analysed using BeadStudio version 1.5.1.3 using the average chip normalization method.
|
| |
|
| Submission date |
May 20, 2011 |
| Last update date |
May 18, 2015 |
| Contact name |
Damien Chaussabel |
| E-mail(s) |
DChaussabel@benaroyaresearch.org
|
| Organization name |
Baylor Institute for Immunology Research
|
| Street address |
3434 Live Oak
|
| City |
Dallas |
| State/province |
TX |
| ZIP/Postal code |
75204 |
| Country |
USA |
| |
|
| Platform ID |
GPL10558 |
| Series (1) |
| GSE29429 |
Whole Blood Transcriptional Response to Early Acute HIV |
|
