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Sample GSM791884 Query DataSets for GSM791884
Status Public on Nov 04, 2013
Title MB2 non
Sample type RNA
 
Source name MB2 non
Organism Homo sapiens
Characteristics cell type: non‐Treg cells (CD4+ CD25‐ CD127hi)
non pregnant, cord blood, or maternal blood: maternal blood
Treatment protocol cells sorted by flow cytometry and added to cells to signal lysis buffer and stored at minus 80 degrees celcius until RNA extraction
Whole blood samples collected using PAXgene RNA tubes and stored at -20 degrees Celcius until processing
Extracted molecule total RNA
Extraction protocol RNA was extracted using Qiagen Rneasy mini kit
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion TotalPrep RNA Amplification Kit kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 5125398042_E
Data processing Data was normalised using quantile normalisation algorithm in BRB arrayTools
 
Submission date Sep 08, 2011
Last update date Nov 04, 2013
Contact name Grant Parnell
E-mail(s) gpar3109@uni.sydney.edu.au
Organization name University of Sydney
Department Nepean Clinical School
Lab Intensive Care
Street address Nepean Hospital
City Kingswood
State/province NSW
ZIP/Postal code 2747
Country Australia
 
Platform ID GPL6947
Series (1)
GSE31976 regulatory T cells in human pregnancy

Data table header descriptions
ID_REF
VALUE log base 2 quantile normalised intensity
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1802380 9.243989944 0
ILMN_2375156 7.413945675 0.01186
ILMN_1697642 7.480552197 0.00791
ILMN_1681845 9.772236824 0
ILMN_1797055 7.400562286 0.01449
ILMN_2342515 7.447332859 0.01054
ILMN_1800425 9.203937531 0
ILMN_1783852 8.492616653 0
ILMN_1721344 9.009679794 0
ILMN_1701854 7.703334332 0.00264
ILMN_1678707 11.10179329 0
ILMN_1778226 7.095890522 0.60079
ILMN_1669674 7.60859251 0.00264
ILMN_1678052 8.151173592 0
ILMN_1682812 8.011644363 0
ILMN_1777811 7.966823101 0
ILMN_1663447 7.605354786 0.00264
ILMN_2343563 7.763987064 0.00264
ILMN_1790014 7.325449467 0.02899
ILMN_1758529 7.173902035 0.22266

Total number of rows: 12977

Table truncated, full table size 368 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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